Commit Graph
81453 Commits
Author SHA1 Message Date
mvdbeek c6b2a34916 Merge branch 'release_24.2' into dev
# Conflicts:
#	lib/galaxy/version.py
#	packages/app/HISTORY.rst
#	packages/app/setup.cfg
#	packages/auth/HISTORY.rst
#	packages/auth/setup.cfg
#	packages/config/HISTORY.rst
#	packages/config/setup.cfg
#	packages/data/HISTORY.rst
#	packages/data/setup.cfg
#	packages/files/HISTORY.rst
#	packages/files/setup.cfg
#	packages/job_execution/HISTORY.rst
#	packages/job_execution/setup.cfg
#	packages/job_metrics/HISTORY.rst
#	packages/job_metrics/setup.cfg
#	packages/navigation/HISTORY.rst
#	packages/navigation/setup.cfg
#	packages/objectstore/HISTORY.rst
#	packages/objectstore/setup.cfg
#	packages/schema/HISTORY.rst
#	packages/schema/setup.cfg
#	packages/selenium/HISTORY.rst
#	packages/selenium/setup.cfg
#	packages/test_api/HISTORY.rst
#	packages/test_api/setup.cfg
#	packages/test_base/HISTORY.rst
#	packages/test_base/setup.cfg
#	packages/test_driver/HISTORY.rst
#	packages/test_driver/setup.cfg
#	packages/tool_shed/HISTORY.rst
#	packages/tool_shed/setup.cfg
#	packages/tool_util/HISTORY.rst
#	packages/tool_util/setup.cfg
#	packages/tours/HISTORY.rst
#	packages/tours/setup.cfg
#	packages/util/HISTORY.rst
#	packages/util/setup.cfg
#	packages/web_apps/HISTORY.rst
#	packages/web_apps/setup.cfg
#	packages/web_framework/HISTORY.rst
#	packages/web_framework/setup.cfg
#	packages/web_stack/HISTORY.rst
#	packages/web_stack/setup.cfg
2025-03-16 11:38:19 +01:00
mvdbeek 6a610a1b4b Start work on 24.2.4.dev0 2025-03-16 11:38:12 +01:00
mvdbeek f82f1fc5e8 Create version 24.2.3 v24.2.3 2025-03-16 11:37:42 +01:00
mvdbeek ce03d9f7ca Merge remote-tracking branch 'upstream/release_24.2' into dev 2025-03-15 16:32:42 +01:00
David López f7acf17178 Merge pull request #19347 from jmchilton/decompose_repeat
Rework some form components for reuse.
2025-03-14 09:45:10 +01:00
mvdbeek 8622dfa237 Merge branch 'release_24.2' into dev 2025-03-14 09:32:27 +01:00
John Chilton a58d6aeadc Workaround sticky tooltips when buttons become disabled. 2025-03-13 15:42:37 -04:00
John Chilton cce4cea255 Use icon references instead of library adding. 2025-03-13 15:38:36 -04:00
John Chilton caa606c486 Selenium fix for graying out invalid repeat buttons. 2025-03-13 15:35:52 -04:00
John Chilton ae4ff21faf Decompose FormRepeat for reuse. 2025-03-13 15:35:52 -04:00
John Chilton bb16d34e92 Gray out repeat buttons that don't make sense. 2025-03-13 15:35:52 -04:00
John Chilton 808d5f9448 Merge pull request #19807 from mvdbeek/use_materialized_datasets_in_pulsar
[24.2] Use materialized datasets in pulsar job runner
2025-03-13 13:48:48 -04:00
Marius van den Beek ca61f83ed5 Merge pull request #19799 from mvdbeek/fix_tool_directory_transfer
[24.2] Fix tool directory pulsar transfer
2025-03-13 17:58:33 +01:00
mvdbeek 31aeefd65f Use materialized datasets in pulsar 2025-03-13 17:28:28 +01:00
Marius van den Beek 729a079cda Merge pull request #19781 from ahmedhamidawan/fix_workflow_run_graph_non_input_steps_bug
Fix workflow run graph non input steps not appearing bug
2025-03-13 16:31:12 +01:00
mvdbeek 858593a8ba Fix transfer of $_TOOL_DIRECTORY subdirectories
Goes together with https://github.com/galaxyproject/pulsar/pull/385
2025-03-13 16:19:10 +01:00
Nicola Soranzo 05b9467c35 Merge branch 'release_24.2' into dev 2025-03-13 00:37:29 +00:00
Dannon 1fb9cd4a77 Merge pull request #19665 from ahmedhamidawan/rename_history_on_click
Click to edit history name in `HistoryPanel`
2025-03-12 16:32:07 -04:00
Dannon 0d9b83473a Merge pull request #19773 from galaxyproject/dependabot/npm_and_yarn/client/axios-1.8.2
Bump axios from 1.7.4 to 1.8.2 in /client
2025-03-12 14:43:51 -04:00
Dannon c5dad534bf Merge pull request #19788 from galaxyproject/dependabot/npm_and_yarn/client/babel/runtime-corejs3-7.26.10
Bump @babel/runtime-corejs3 from 7.23.2 to 7.26.10 in /client
2025-03-12 14:43:34 -04:00
Marius van den Beek 53dec0c554 Merge pull request #19790 from mvdbeek/fix_converter_linting
[24.2] Fix parameter model constructions with leading underscores, fixes converter linting
2025-03-12 19:08:58 +01:00
Marius van den Beek 6454aea806 Merge pull request #19793 from dannon/fix-define-warnings
Remove unused (define* - compiler macro) imports from TextEditor.vue
2025-03-12 15:03:10 +01:00
Dannon Baker 88bf3dbd4e Remove unused (define* - compiler macro) imports from TextEditor.vue 2025-03-12 09:12:07 -04:00
mvdbeek 773301a679 Provide explicit inputs 2025-03-12 12:40:57 +01:00
mvdbeek 21f1fc9db2 Use safe field names and alias to handle _ parameter names 2025-03-12 12:40:56 +01:00
mvdbeek ad1591ebc5 Select new linter classes 2025-03-12 12:39:06 +01:00
John Chilton 8c0011b132 Merge pull request #19789 from jmchilton/rebuild_schema
Rebuild API schema for latest dev.
2025-03-11 21:55:48 -04:00
John Chilton ea3fdc71ab Rebuild schema. 2025-03-11 20:33:35 -04:00
dependabot[bot] f021ac10b1 Bump @babel/runtime-corejs3 from 7.23.2 to 7.26.10 in /client
Bumps [@babel/runtime-corejs3](https://github.com/babel/babel/tree/HEAD/packages/babel-runtime-corejs3) from 7.23.2 to 7.26.10.
- [Release notes](https://github.com/babel/babel/releases)
- [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md)
- [Commits](https://github.com/babel/babel/commits/v7.26.10/packages/babel-runtime-corejs3)

---
updated-dependencies:
- dependency-name: "@babel/runtime-corejs3"
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
2025-03-11 23:23:45 +00:00
John Davis bd75278ef9 Merge pull request #19679 from jdavcs/24.2_role_name_displayed_name_description
[24.2] Fix private role name performance issue
2025-03-11 15:03:48 -04:00
John Davis b69a736a35 Fix notifications 2025-03-11 13:06:52 -04:00
Marius van den Beek c7273389c4 Merge pull request #19779 from ahmedhamidawan/improve_workflow_typing_client
Add better `WorkflowSummary` type
2025-03-11 17:22:13 +01:00
Martin Cech 99678f2f86 Merge pull request #19776 from bernt-matthias/topic/api-dec-fix
Fix wording of API doc string
2025-03-11 16:59:32 +01:00
Marius van den Beek ffcb2ca23e Merge pull request #19762 from jmchilton/edam_test_fix
Revise consistently failing edam tool panel view test.
2025-03-11 15:59:04 +01:00
Marius van den Beek 740c0c56cd Merge pull request #19784 from sanjaysrikakulam/webdav_filesource_template_update
Update webdav user file source template help text
2025-03-11 15:41:19 +01:00
Nicola Soranzo 679083d14e Merge branch 'release_24.2' into dev 2025-03-11 11:20:14 +00:00
Sanjay Srikakulam e086cf548d Update webdav user file source template 2025-03-11 11:19:17 +00:00
Nicola Soranzo cc18d879c4 Merge pull request #19783 from nsoranzo/release_24.2_prm_format
[24.2] Add rDock prm datatype
2025-03-11 11:14:37 +00:00
John Davis ef092809ab Fix groups create/edit permissions 2025-03-11 00:34:26 -04:00
John Davis a03673be98 Fix append vs add in dataset controller 2025-03-11 00:34:26 -04:00
John Davis 5251d94fab Ensure user's email is stored in user_context as their private role name 2025-03-11 00:34:26 -04:00
John Davis d128682abc Fix dataset manager: serialize_dataset_association_roles 2025-03-11 00:34:26 -04:00
John Davis f5da759245 Fix api/group_roles::index 2025-03-11 00:34:26 -04:00
John Davis 8de7851611 Fix library_datasets::show_roles() 2025-03-11 00:34:26 -04:00
John Davis 5c143ef75a Fix controllers/dataset::get_edit 2025-03-11 00:34:26 -04:00
John Davis 3c2244bd50 Fix library_folders::get_permissions() 2025-03-11 00:34:26 -04:00
John Davis 3b35f1f58f Fix api/users::get_permissions() 2025-03-11 00:34:26 -04:00
John Davis 5beeb96f92 Fix history permissions 2025-03-11 00:34:26 -04:00
John Davis e878d57029 Fix manage library permissions
Display associated user email as role name for private roles, and role
name for non-private roles.
2025-03-11 00:34:25 -04:00
John Davis e050229fdd Add displayed_name to /api/roles endpoint 2025-03-11 00:34:25 -04:00