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81,569 Commits 63 Branches 246 Tags
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Commit Graph
198 Commits
Author SHA1 Message Date
Enis Afgan 1d215a7d2d Add RStudio IT based on upstream image from Bioconductor 2025-03-18 16:45:14 -04:00
Enis Afgan c6e553be71 Update RStudio IT 2025-02-26 16:01:00 -05:00
Marius van den Beek 9960c31265 Merge pull request #16837 from lldelisle/ilastik 
Add Interactive Tool Ilastik
 2024-11-15 18:44:09 +01:00
Nate Coraor 615bd19718 Keep Jupyter 1.0.1 IT as a separate tool 2024-10-01 12:21:29 -04:00
Nate Coraor 1e0f928809 Jupyter Interactive Tool 1.0.1/24.07 2024-09-20 13:07:10 -04:00
Delphine LariviereandBjörn Grüning 8dea665f08 Apply suggestions from code review 
Co-authored-by: Björn Grüning <bjoern@gruenings.eu>
 2024-08-01 11:25:09 -04:00
Delphine Lariviere 0bc0f984f8 add blob toolkit to the list of interactive tools 2024-07-31 18:57:26 -04:00
Martin Cech ed117ef483 Merge pull request #18220 from anuprulez/patch-5 
Update GPU JupyterLab tool
 2024-06-11 02:31:31 +02:00
Nate Coraor 3359a75ffc Merge pull request #18225 from thepineapplepirate/qiskit_in_galaxy 
new edits and now using a docker image with qiskit1.0
 2024-06-03 13:53:42 -04:00
thepineapplepirate b38e85cef3 bumped up version 2024-05-24 14:41:07 -05:00
thepineapplepirate b7cc2e8356 new edits and now using a docker image with qiskit1.0 2024-05-24 14:15:11 -05:00
Anup Kumar a55a56938b Update GPU JupyterLab tool 
- Add a new version (0.4)
- Add feature to take GitHub URL to clone repositories while startup
 2024-05-24 11:51:31 +02:00
Helena Rasche 072a1ea12a Rename to something more searchable 2024-03-27 13:43:46 +01:00
Nate Coraor 5bbfa85ab3 Update RStudio GxIT to use the reworked 23.1 image 2024-02-22 15:08:08 -05:00
Björn Grüning 26ffc86b93 Merge pull request #17170 from thepineapplepirate/qiskit_in_galaxy 
Qiskit in galaxy
 2023-12-12 21:26:59 +01:00
thepineapplepirateandNicola Soranzo 48417b0409 Update tools/interactive/interactivetool_qiskit_jupyter_notebook.xml 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2023-12-12 14:09:27 -05:00
Raubenolt 46d53d14c8 made suggested changes 2023-12-11 20:47:25 -05:00
Sveinung Gundersen b0e13e5149 Added "requires_path_in_url" and "requires_path_in_header" attributes to entry points for tools. Sendoff to gx-it-proxy. Cleanup 2023-11-15 12:54:14 +01:00
Sveinung Gundersen 51db30370c Using label instead of name to identify entrypoint 2023-11-15 12:54:14 +01:00
Sveinung Gundersen 05f8de5d98 Updated JupyTool, Open Refine, Guacamole Desktop, and RStudio tools to potentially support path-based proxy 2023-11-15 12:48:39 +01:00
Marius van den Beek eecaeb7fad Merge pull request #15313 from pcm32/patch-14 
Update cellxgene interactive tool to 1.1.1
 2023-10-20 15:48:14 +02:00
Lucille Delisle 822f4c5927 use directory where app user has rw access 2023-10-13 14:05:05 +02:00
Lucille Delisle ce82be8f44 raise error when identical identifiers 2023-10-12 15:31:46 +02:00
Lucille Delisle 9a1cc32e34 add ./ 2023-10-12 15:10:37 +02:00
Björn Grüning 8092aba68e add some quotes 2023-10-12 14:11:55 +02:00
Lucille Delisle 4110a93cbf add more info in help section 2023-10-12 08:57:35 +02:00
Lucille Delisle 8aac1ccf62 change run_ilastik to ilastik_with_args to fit the docker image + put images in working directory. 2023-10-12 08:57:12 +02:00
Lucille Delisle aa947abe85 change command and output to make it work 2023-10-10 14:19:10 +02:00
Lucille Delisle 57c1c65cfb fix entry_point 2023-10-09 14:20:22 +02:00
Lucille Delisle ada2dd8015 use available arguments 2023-10-06 17:55:11 +02:00
Ubuntu 65529d132c ilastik wrapper added 2023-10-06 14:10:38 +00:00
thepineapplepirate 566f3973ad new interactive tool for Qiskit in Galaxy 2023-10-04 15:57:32 -04:00
mvdbeek 913182fac9 Merge branch 'release_23.1' into dev 2023-08-31 13:04:47 +02:00
Cameron Hyde 517ca97c03 Remove render.py script from iSEE 2023-08-30 09:50:48 +10:00
Sandy Rogers 330310e69f Update interactivetool_mgnify_notebook to v1.2.2 2023-08-04 11:28:39 +01:00
Sandy Rogers 8a1b58caf0 Update MGnify interactive tool to v1.1.0 2023-06-02 17:34:00 +01:00
Pablo Moreno 1741fa45ee Some tabs to spaces 2023-03-28 10:19:54 +01:00
Pablo Moreno 0b20473129 Layer and optionally make var field unique. 2023-03-27 15:06:15 +01:00
Pablo Moreno 703751b65c Avoid errors automatically detected by galaxy due to stderr output 2023-03-08 13:17:11 +00:00
Pablo Moreno 999322b354 Adds previous version as separate file 2023-03-07 12:05:10 +00:00
Pablo Moreno e9e8f9be27 Change name and tutorial link 2023-03-07 12:03:34 +00:00
Pablo Moreno acc34f6d21 Adds help 2023-03-07 08:59:43 +00:00
Anup Kumar 56a2ace72d Update interactivetool_ml_jupyter_notebook.xml 
Add changes to GPU Jupyterlab tool based on Jupytool
 2023-01-24 16:02:15 +01:00
Pablo Moreno acd862c632 Clean up 2023-01-16 17:29:22 +00:00
Pablo Moreno b860465f9c Handling of files not indexed by gene symbols and output recovery 2023-01-16 17:28:43 +00:00
Pablo Moreno 998cd562c1 Update cellxgene interactive tool to 1.1.1 
Call is the same on 1.1.1, at least as it is used here. Will try to add some options here as well (to specify gene symbols field and others).
 2023-01-16 15:05:43 +00:00
Björn Grüning 5f2b31b088 Merge pull request #15068 from bebatut/pavian-gxit 
Add interactive tool for Pavian
 2022-12-10 15:06:19 +01:00
Björn Grüning 7eea95e7d6 use versioned image instead 2022-12-10 13:03:36 +01:00
Dannon 8095fb7460 Merge pull request #14950 from bebatut/interactivetool_mgnify_notebook 
Add interactive tool for Mgnify Jupyter lab
 2022-12-09 11:53:59 -05:00
Björn Grüning 128c2c53ac Update interactivetool_mgnify_notebook.xml 2022-12-09 16:17:17 +01:00