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Update RStudio GxIT to use the reworked 23.1 image

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Nate Coraor
2024-02-22 15:08:08 -05:00
parent f68ab16b81
commit 5bbfa85ab3
1 changed files with 3 additions and 9 deletions
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tools/interactive/interactivetool_rstudio.xml
+3 -9
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@@ -1,7 +1,6 @@
<tool id="interactive_tool_rstudio" tool_type="interactive" name="RStudio" version="0.2" profile="22.01">
<tool id="interactive_tool_rstudio" tool_type="interactive" name="RStudio" version="0.3" profile="22.01">
<requirements>
<!--container type="docker">quay.io/erasche/docker-rstudio-notebook:19.09</container-->
<container type="docker">quay.io/erasche/docker-rstudio-notebook:ie2</container>
<container type="docker">quay.io/galaxy/docker-rstudio-notebook:23.1</container>
</requirements>
<entry_points>
<entry_point name="RStudio" requires_domain="False" requires_path_in_header_named="X-RStudio-Root-Path">
@@ -18,7 +17,6 @@
<environment_variable name="API_KEY" inject="api_key" />
</environment_variables>
<command><![CDATA[
#import re
export GALAXY_WORKING_DIR=`pwd` &&
mkdir -p ./rstudio/outputs/ &&
mkdir -p ./rstudio/data &&
@@ -26,15 +24,11 @@
## change into the directory where the notebooks are located
cd ./rstudio/ &&
sed -i 's|/monitor.*||g' /etc/services.d/nginx/run &&
##/etc/init.d/syslog-ng start &&
/init &
##rstudio-server start &&
sleep 5 &&
chmod 777 /tmp -R &&
tail -f /var/log/rstudio-server/rserver.log
tail --retry -f /var/log/rstudio/rstudio-server/rserver.log
]]>
</command>