Tillman
bd42cd0db3
Fix typing
2024-01-16 12:52:07 +01:00
Tillman
ac7e7a86c2
Resolve merge mistakes
2024-01-16 12:52:07 +01:00
Tillman
7719c5b16a
Regenerate the client schema
2024-01-16 12:52:07 +01:00
Tillman
0d375fd413
Revert some changes
2024-01-16 12:52:07 +01:00
Tillman
44d909a1ee
Resolve issue with pydnatic 2 and new models
2024-01-16 12:52:07 +01:00
Tillman
48b355f266
Refine pydantic models
2024-01-16 12:52:07 +01:00
Tillman
5a8a89a462
Remove testing deprecated route
2024-01-16 12:52:07 +01:00
Tillman
e02eee54eb
Add missing query params for index_invocations operations
2024-01-16 12:52:07 +01:00
Tillman
11a5b8a372
Rename WorkFlowInvocationResponse models
2024-01-16 12:52:07 +01:00
Tillman
7195af85e9
Specify extra fields and adjust default values of fields in InvocationReport model
2024-01-16 12:52:07 +01:00
Tillman
bf9d1f5604
Remove unnecessary encoding of id's
2024-01-16 12:52:07 +01:00
Tillman
f0c34d1a48
Specify body of the payload of the create_invocations_from_store operations
2024-01-16 12:52:07 +01:00
Tillman
7a50e8bf65
Set total_matches in response headers of index_inovcation operation
2024-01-16 12:52:07 +01:00
Tillman
101505ea59
Remove comment
2024-01-16 12:52:07 +01:00
Tillman
fa9e021088
Mark history_id as required in pydantic model for create_invocations_from_store
2024-01-16 12:52:07 +01:00
Tillman
d1ef383394
Add pydantic model to return of operations
2024-01-16 12:52:07 +01:00
Tillman
975a0709f8
Refactor pydantic model to enable reuse
2024-01-16 12:52:07 +01:00
Tillman
cdc9a94620
Remove mapping to legacy route
2024-01-16 12:52:07 +01:00
Tillman
dd8269a9a1
Refactor create_invocations_from_store operation to FastAPI
2024-01-16 12:52:07 +01:00
Tillman
714011e85f
Move model InvocationSerializationParams to invocations schema file
2024-01-16 12:52:07 +01:00
Tillman
687b65ccef
Refactor internal method create_from_store into invocations service
2024-01-16 12:52:07 +01:00
Tillman
8a1604e357
Move model CreateInvocationFromStore to invocation schema file
2024-01-16 12:52:07 +01:00
Tillman
ac2c3b2307
Refactor index_invocations operations
2024-01-16 12:52:07 +01:00
Tillman
d7a81bb24e
Remove mapping to legacy route
2024-01-16 12:52:07 +01:00
Tillman
416d62998c
Modify param definition to make it reusable
2024-01-16 12:52:07 +01:00
Tillman
9eecaeffcb
Start refactoring on index_invocations operations
2024-01-16 12:52:07 +01:00
Nicola Soranzo
7af682d76f
Merge pull request #17302 from nsoranzo/17274_followup
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Follow-up on #17274 and #17262
2024-01-15 21:12:17 +00:00
Nicola Soranzo
6e52a56a0a
Merge pull request #17301 from nsoranzo/package_tests_fixes
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Package tests fixes
2024-01-15 20:50:25 +00:00
Nicola Soranzo
69d197e75e
Update missed pydantic version pin
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Forgotten in https://github.com/galaxyproject/galaxy/pull/17262 .
Fix broken Update dependencies CI build:
https://github.com/galaxyproject/galaxy/actions/runs/7509887325/job/20447594708
2024-01-15 19:38:44 +00:00
Nicola Soranzo
15041445cc
Move new `schemafname` parameter to last
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to not risk breaking third-party users of galaxy-util.
Introduced in commit 777862edf6
2024-01-15 19:34:28 +00:00
John Chilton
0506b94bc8
Merge pull request #17293 from mvdbeek/fix_any_type
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Fix any type for tool_data_file_path
2024-01-15 13:46:45 -05:00
Nicola Soranzo
e565c7a9b5
Install node from setup-node action
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instead of relying on the node version pre-installed in the CI worker.
2024-01-15 18:44:28 +00:00
Nicola Soranzo
81a16d3e92
Skip unit tests that require node when it's not installed
2024-01-15 18:32:05 +00:00
Nicola Soranzo
bbf02a0fdb
Use venv module instead of virtualenv
2024-01-15 17:31:57 +00:00
John Chilton
344a34f44b
Merge pull request #17299 from mvdbeek/improve_model_manager_typing
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Improve ModelManager type hints
2024-01-15 12:29:20 -05:00
Marius van den Beek
122b19a883
Merge pull request #17296 from ElectronicBlueberry/workflow_comments_pydantic2_fix
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Fix Workflow Comment Model for Pydantic 2
2024-01-15 15:38:52 +01:00
mvdbeek
2677a131a8
Improve ModelManager type hints
2024-01-15 15:11:45 +01:00
Nuwan Goonasekera
f7018e4732
Merge pull request #17274 from uwwint/oidc/add-backend-schema
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Add OIDC backend configuration schema and validation
2024-01-15 17:53:54 +05:30
Laila Los
dc2132d305
fix model for pydantic 2
2024-01-15 13:12:25 +01:00
mvdbeek
03f01da108
Merge branch 'release_23.2' into dev
2024-01-15 12:09:43 +01:00
mvdbeek
a2cb91487a
Merge branch 'release_23.1' into release_23.2
2024-01-15 12:05:09 +01:00
Marius van den Beek
ff173ed865
Merge pull request #17219 from guerler/grids_history
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Vueifiy History Grids
2024-01-15 11:51:41 +01:00
mvdbeek
a66215595f
Fix any type for tool_data_file_path
2024-01-15 11:32:47 +01:00
mvdbeek
eb36ad3873
Use galaxy.util.resources.files
2024-01-15 10:52:20 +01:00
Uwe Winter
57997e0027
move location of XSD to lib/galaxy/authnz/xsd
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change processing order for validation to occur after pre-processing the XML
ensure validation is only done if lxml is available
raise validation error, such that issue is immediately visible to the user.
2024-01-15 13:10:49 +11:00
Nate Coraor
8ae1db1c9e
Merge pull request #17280 from jdavcs/23.2_pendingrollbackerror
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[23.2] Rollback invalidated transaction
2024-01-13 17:16:24 -05:00
John Davis
d1d8b08a20
Add one more check for invalidated transaction
2024-01-13 16:17:42 -05:00
Björn Grüning
390a8fee01
Merge pull request #17244 from ElectronicBlueberry/workflow-node-improvements-followup
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Workflow node connector improvements followup
2024-01-13 18:19:27 +01:00
John Davis
cf53c05fd1
Log an error message
2024-01-13 11:01:27 -05:00
John Davis
cb01378faa
Rollback invalidated transaction
2024-01-12 16:05:40 -05:00
Tillman