mvdbeek
bbe3f25642
Move datatype test file to lib/galaxy/datatypes/test
2021-10-19 19:03:55 +02:00
Alexander OSTROVSKY
7aa94c3291
re-add assert
2021-10-19 09:30:20 -04:00
Alexander OSTROVSKY
ed303913c2
remove extra test lines
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python lint
2021-10-19 09:30:20 -04:00
Alexander OSTROVSKY
dd9e3fc373
added sniffer for yaml
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import order
Better sniff for big files, removed extraneous comments
Better test for bigger files
lint
safe load, yaml error
typo
2021-10-19 09:30:20 -04:00
Alexander OSTROVSKY
cf9298b762
linted
2021-10-19 09:30:20 -04:00
Alexander OSTROVSKY
e4d821e4f1
Added yaml support
2021-10-19 09:30:20 -04:00
Marius van den Beek
b5d7c95b1c
Merge pull request #12726 from dannon/chart-download-overhaul
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[21.09] Charts downloads fixes and enhancements.
2021-10-19 14:57:42 +02:00
Marius van den Beek
2f0ab3f154
Merge pull request #12713 from bernt-matthias/topic/pretext
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[21.09] Add file_ext property to Pretext and others datatypes
2021-10-19 14:54:22 +02:00
Marius van den Beek
99857fd39f
Merge pull request #12737 from dannon/fix-chrome-scrolling
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[21.09] Fix chrome scrolling on insert in markdown editor
2021-10-19 14:21:03 +02:00
Matthias Bernt
3a2718470d
fix linter error
2021-10-19 12:36:32 +02:00
Matthias Bernt
a898771e2b
add more missing file_ext
2021-10-19 12:36:32 +02:00
Matthias Bernt
a9099c2586
add file_ext property to Pretext
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otherwise sniffing does not work
2021-10-19 12:36:32 +02:00
Dannon Baker
4dadfff6bc
Bugfix -- markdown editor scrolling in chrome for dialog-based elements (which change focus)
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Need to set selectionEnd prior to focus() call to get this to work
right.
2021-10-18 13:01:47 -04:00
mvdbeek
ea40edf1b7
Merge branch 'release_21.05' into release_21.09
2021-10-18 11:08:01 +02:00
Marius van den Beek
6fcdc5c44d
Merge pull request #12731 from mvdbeek/fix_bad_merge
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[21.05] Fix bad merge
2021-10-18 11:06:21 +02:00
mvdbeek
f162322b35
Fix bad merge
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we've changed the import
2021-10-18 10:16:17 +02:00
mvdbeek
9c4b6305b9
Merge branch 'release_21.05' into release_21.09
2021-10-18 08:29:12 +02:00
mvdbeek
2a4cd49083
Merge branch 'release_21.01' into release_21.05
2021-10-18 08:28:04 +02:00
mvdbeek
14b6579eb1
Merge branch 'release_20.09' into release_21.01
2021-10-18 08:23:32 +02:00
mvdbeek
b60e5ea76d
Merge branch 'release_20.05' into release_20.09
2021-10-18 08:22:04 +02:00
David López
aee63e5aba
Merge pull request #12728 from jmchilton/show_page_pdf_fixes
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[21.09] Various show page PDF bug fixes.
2021-10-17 20:03:36 +02:00
John Chilton
5cd46c3d5e
Various show page PDF bug fixes.
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- In FastAPI mode GET /api/pages/{id}.pdf was being masked by /api/pages/{id} and the tested 400 was an invalid ID error.
- trans.response was being used in the service layer and was unavailable under FastAPI - moved setting response type back up into the controller.
- API tests should skip if the Galaxy configuration is invalid - it wasn't doing this.
While I was in there I also tweaked the exception handling a bit to indicate that this is not a USER FORBIDDEN (403) operation so much as an optional SERVER configuration NOT IMPLEMENTED (501).
2021-10-16 15:00:59 -04:00
Dannon Baker
4170ec3571
Fix wonky scaling math for image embed into pdf, drop big header
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comments since it's just three methods now.
2021-10-16 07:50:27 -04:00
Marius van den Beek
bf4dc3bd46
Merge pull request #12722 from mvdbeek/fix_recursively_deleting_hdcas
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[20.05] Continue deleting dataset collection if member HDA has no history
2021-10-16 11:09:54 +02:00
Dannon Baker
3f85fa8cac
Force a white background (which charts can overwrite, but otherwise these generally don't look right)
2021-10-15 20:23:49 -04:00
Dannon Baker
0f3e776dc6
Fix webpack config to shift chunks out of libs for screenshot deps
2021-10-15 20:21:50 -04:00
Dannon Baker
563b165683
Use dynamic import for screenshot due to large libs; remove jquery,
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refactor a bit.
2021-10-15 19:56:45 -04:00
Dannon Baker
309499e4e1
PDF no longer redirects to a third party; we generate it on the fly now.
2021-10-15 17:26:16 -04:00
Dannon Baker
e77a99203d
Use jspdf to generate pdfs on the fly for downloads
2021-10-15 15:43:09 -04:00
Dannon Baker
e620959e43
Use libraries for more robust support of exporting images from charts
2021-10-15 15:31:33 -04:00
mvdbeek
0aaef9c93e
Continue deleting dataset collection if member HDA has no history
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These can be cleaned up with pgcleanup.
2021-10-15 19:09:59 +02:00
Dannon
0c1c0be38b
Merge pull request #12702 from guerler/reduce_flickering
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[21.09] Reduce number of Tool Form requests in Workflow Editor, improve visibility of Tool Infos
2021-10-15 10:58:31 -04:00
Nicola Soranzo
bb96d2df96
Merge pull request #12718 from bernt-matthias/topic/vg-gz
2021-10-15 14:00:19 +01:00
Matthias Bernt
6d14b2b73d
make vg a subclass of CompressedArchive
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the test data in IUC's vg repo is (`file test-data/*vg`):
- test-data/hla.vg: data
- test-data/x.vg: Blocked GNU Zip Format (BGZF; gzip compatible), block length 2909
this makes https://github.com/galaxyproject/tools-iuc/pull/4070
fail because the x.vg file is decompressed during upload
2021-10-15 12:44:42 +02:00
guerler
9e672c0805
Add tool footer test to verify proper handling of citations
2021-10-14 16:57:03 -04:00
guerler
dec3e5c89d
Add test case for promise queue
2021-10-14 14:50:35 -04:00
guerler
3adbb84e79
Refresh citation details if tool node changes, augment workflow loading alert.
2021-10-14 08:40:16 -04:00
guerler
a8701a3402
Consolidate render wait calls in workflow editor tests
2021-10-14 06:50:40 -04:00
guerler
88dcba87af
Adjust selenium and jest tests
2021-10-14 06:32:18 -04:00
guerler
1849568754
Enable multiple arguments in promise queue
2021-10-14 00:57:45 -04:00
guerler
1b22fa5046
Throttle number of workflow editor form requests to one per second
2021-10-14 00:42:23 -04:00
guerler
f5921df8a9
Add a non-jquery promise queue to reduce form update requests (particularly useful for sliders in the workflow forms)
2021-10-14 00:21:41 -04:00
guerler
11ece208ef
Use paused state background for info alerts
2021-10-13 23:18:02 -04:00
guerler
7e2a6b11bf
Reduce flickering by removing the spinning card icon and increasing background opacity
2021-10-13 22:04:20 -04:00
Dannon
ef6b0c3b66
Merge pull request #12641 from OlegZharkov/fix-remote-data-dialog
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[21.09] Fix ambiguity in remote file upload
2021-10-13 14:01:57 -04:00
Oleg Zharkov
b040e3cdb8
fix test_history_import_export_ftp Selenium test
2021-10-12 20:00:00 +02:00
Oleg Zharkov
41b49dda3b
fix selenium tests and cleanup
2021-10-12 17:08:37 +02:00
Oleg Zharkov
852b328c2d
fix linting
2021-10-12 16:17:22 +02:00
Oleg Zharkov
d8fed97115
fix jest unit test
2021-10-11 20:45:53 +02:00
Björn Grüning
4c6ad48048
Merge pull request #12619 from natefoo/update-sorter
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[21.09] Modernize sorter (sort1) tool
2021-10-10 16:28:14 +02:00
mvdbeek