mvdbeek
b278d8a2aa
Merge branch 'release_23.2' into dev
2024-02-08 11:35:49 +01:00
John Davis
019c49594f
Fix formatting around new version in HISTORY.rst
2024-02-02 10:12:34 -05:00
John Davis
ac15c87379
Update package versions to 23.2.dev0
...
Update setup.cfg, HISTORY.rst.
Make all dev package versions consistent.
2024-02-01 22:50:21 -05:00
John Davis
121e38d570
Drop empty bullet points from package HISTORY.rst files
2024-02-01 16:44:49 -05:00
Ubuntu
6860c9a0fb
Add support for Python 3.12
2024-01-21 11:57:59 +00:00
mvdbeek
5afce686b0
Merge branch 'release_23.2' into dev
2024-01-04 16:15:31 +01:00
mvdbeek
7fc0b15be7
Merge branch 'release_23.1' into release_23.2
...
# Conflicts:
# lib/galaxy/version.py
# packages/app/HISTORY.rst
# packages/app/setup.cfg
# packages/auth/HISTORY.rst
# packages/auth/setup.cfg
# packages/config/HISTORY.rst
# packages/config/setup.cfg
# packages/data/HISTORY.rst
# packages/data/setup.cfg
# packages/files/HISTORY.rst
# packages/files/setup.cfg
# packages/job_execution/HISTORY.rst
# packages/job_execution/setup.cfg
# packages/job_metrics/HISTORY.rst
# packages/job_metrics/setup.cfg
# packages/navigation/HISTORY.rst
# packages/navigation/setup.cfg
# packages/objectstore/HISTORY.rst
# packages/objectstore/setup.cfg
# packages/selenium/HISTORY.rst
# packages/selenium/setup.cfg
# packages/test_api/HISTORY.rst
# packages/test_api/setup.cfg
# packages/test_base/HISTORY.rst
# packages/test_base/setup.cfg
# packages/test_driver/HISTORY.rst
# packages/test_driver/setup.cfg
# packages/tool_util/HISTORY.rst
# packages/tool_util/setup.cfg
# packages/tours/HISTORY.rst
# packages/tours/setup.cfg
# packages/util/HISTORY.rst
# packages/util/setup.cfg
# packages/web_apps/HISTORY.rst
# packages/web_apps/setup.cfg
# packages/web_framework/HISTORY.rst
# packages/web_framework/setup.cfg
# packages/web_stack/HISTORY.rst
# packages/web_stack/setup.cfg
2024-01-04 16:15:26 +01:00
mvdbeek
20e560c2e2
Start work on 23.1.5.dev0
2024-01-04 16:15:18 +01:00
mvdbeek
5dccc48db7
Create version 23.1.4
2024-01-04 16:15:11 +01:00
mvdbeek
ca6f9b3586
Merge branch 'release_23.2' into dev
2023-12-01 11:54:53 +01:00
mvdbeek
87c98787a4
Merge branch 'release_23.1' into release_23.2
...
# Conflicts:
# lib/galaxy/version.py
# packages/app/HISTORY.rst
# packages/app/setup.cfg
# packages/auth/HISTORY.rst
# packages/auth/setup.cfg
# packages/config/HISTORY.rst
# packages/config/setup.cfg
# packages/data/HISTORY.rst
# packages/data/setup.cfg
# packages/files/HISTORY.rst
# packages/files/setup.cfg
# packages/job_execution/HISTORY.rst
# packages/job_execution/setup.cfg
# packages/job_metrics/HISTORY.rst
# packages/job_metrics/setup.cfg
# packages/navigation/HISTORY.rst
# packages/navigation/setup.cfg
# packages/objectstore/HISTORY.rst
# packages/objectstore/setup.cfg
# packages/selenium/HISTORY.rst
# packages/selenium/setup.cfg
# packages/test_api/HISTORY.rst
# packages/test_api/setup.cfg
# packages/test_base/HISTORY.rst
# packages/test_base/setup.cfg
# packages/test_driver/HISTORY.rst
# packages/test_driver/setup.cfg
# packages/tool_util/HISTORY.rst
# packages/tool_util/setup.cfg
# packages/tours/HISTORY.rst
# packages/tours/setup.cfg
# packages/util/HISTORY.rst
# packages/util/setup.cfg
# packages/web_apps/HISTORY.rst
# packages/web_apps/setup.cfg
# packages/web_framework/HISTORY.rst
# packages/web_framework/setup.cfg
# packages/web_stack/HISTORY.rst
# packages/web_stack/setup.cfg
2023-12-01 11:54:51 +01:00
mvdbeek
316f8c1a2c
Start work on 23.1.4.dev0
2023-12-01 11:54:46 +01:00
mvdbeek
d7cc988979
Create version 23.1.3
2023-12-01 11:54:43 +01:00
mvdbeek
dbe1e7464f
Merge branch 'release_23.2' into dev
2023-11-29 19:20:17 +01:00
mvdbeek
64a813e763
Merge branch 'release_23.1' into release_23.2
...
# Conflicts:
# lib/galaxy/version.py
# packages/app/HISTORY.rst
# packages/app/setup.cfg
# packages/auth/HISTORY.rst
# packages/auth/setup.cfg
# packages/config/HISTORY.rst
# packages/config/setup.cfg
# packages/data/HISTORY.rst
# packages/data/setup.cfg
# packages/files/HISTORY.rst
# packages/files/setup.cfg
# packages/job_execution/HISTORY.rst
# packages/job_execution/setup.cfg
# packages/job_metrics/HISTORY.rst
# packages/job_metrics/setup.cfg
# packages/navigation/HISTORY.rst
# packages/navigation/setup.cfg
# packages/objectstore/HISTORY.rst
# packages/objectstore/setup.cfg
# packages/selenium/HISTORY.rst
# packages/selenium/setup.cfg
# packages/test_api/HISTORY.rst
# packages/test_api/setup.cfg
# packages/test_base/HISTORY.rst
# packages/test_base/setup.cfg
# packages/test_driver/HISTORY.rst
# packages/test_driver/setup.cfg
# packages/tool_util/HISTORY.rst
# packages/tool_util/setup.cfg
# packages/tours/HISTORY.rst
# packages/tours/setup.cfg
# packages/util/HISTORY.rst
# packages/util/setup.cfg
# packages/web_apps/HISTORY.rst
# packages/web_apps/setup.cfg
# packages/web_framework/HISTORY.rst
# packages/web_framework/setup.cfg
# packages/web_stack/HISTORY.rst
# packages/web_stack/setup.cfg
2023-11-29 19:20:15 +01:00
mvdbeek
cb1bb4a6ab
Start work on 23.1.3.dev0
2023-11-29 19:20:10 +01:00
mvdbeek
3642185621
Create version 23.1.2
2023-11-29 19:20:07 +01:00
Michael R. Crusoe
c00967cca4
Python 3.8 as new minimum version
...
Fixes: https://github.com/galaxyproject/galaxy/issues/16394
Also upgrade code to Python 3.8 syntax with:
```
ack --type=python -f | grep -v '^lib/galaxy/schema/bco/\|^lib/galaxy/schema/drs/\|lib/tool_shed_client/schema/trs.*.py\|^tools/\|^.venv/\|^.tox/' | grep -v '^lib/galaxy/files/sources/\|^lib/galaxy/job_metrics/\|^lib/galaxy/objectstore/\|^lib/galaxy/tool_util/\|^lib/galaxy/util/' | xargs pyupgrade --py38-plus
```
2023-11-26 18:34:09 +00:00
Nicola Soranzo
65b71cbbd1
Fix requirements of packages
2023-11-21 17:54:31 +00:00
mvdbeek
0d74680762
Merge branch 'release_23.1' into dev
...
# Conflicts:
# lib/galaxy/version.py
# packages/app/HISTORY.rst
# packages/auth/HISTORY.rst
# packages/config/HISTORY.rst
# packages/data/HISTORY.rst
# packages/files/HISTORY.rst
# packages/job_execution/HISTORY.rst
# packages/job_metrics/HISTORY.rst
# packages/navigation/HISTORY.rst
# packages/objectstore/HISTORY.rst
# packages/selenium/HISTORY.rst
# packages/test_api/HISTORY.rst
# packages/test_base/HISTORY.rst
# packages/test_driver/HISTORY.rst
# packages/tool_util/HISTORY.rst
# packages/tours/HISTORY.rst
# packages/util/HISTORY.rst
# packages/web_apps/HISTORY.rst
# packages/web_framework/HISTORY.rst
# packages/web_stack/HISTORY.rst
2023-10-23 21:35:31 +02:00
mvdbeek
3dd88a4357
Start work on 23.1.2.dev0
2023-10-23 21:35:28 +02:00
mvdbeek
e77b17df06
Create version 23.1.1
2023-10-23 21:35:24 +02:00
mvdbeek
5e2d094f62
Merge branch 'release_23.1' into dev
...
# Conflicts:
# packages/app/HISTORY.rst
# packages/auth/HISTORY.rst
# packages/config/HISTORY.rst
# packages/data/HISTORY.rst
# packages/files/HISTORY.rst
# packages/job_execution/HISTORY.rst
# packages/job_metrics/HISTORY.rst
# packages/navigation/HISTORY.rst
# packages/objectstore/HISTORY.rst
# packages/selenium/HISTORY.rst
# packages/test_api/HISTORY.rst
# packages/test_base/HISTORY.rst
# packages/test_driver/HISTORY.rst
# packages/tool_util/HISTORY.rst
# packages/tours/HISTORY.rst
# packages/util/HISTORY.rst
# packages/web_apps/HISTORY.rst
# packages/web_framework/HISTORY.rst
# packages/web_stack/HISTORY.rst
2023-10-23 18:01:54 +02:00
mvdbeek
5aeff97113
Merge branch 'release_23.0' into release_23.1
...
# Conflicts:
# lib/galaxy/version.py
# packages/app/HISTORY.rst
# packages/app/setup.cfg
# packages/auth/HISTORY.rst
# packages/auth/setup.cfg
# packages/config/HISTORY.rst
# packages/config/setup.cfg
# packages/data/HISTORY.rst
# packages/data/setup.cfg
# packages/files/HISTORY.rst
# packages/files/setup.cfg
# packages/job_execution/HISTORY.rst
# packages/job_execution/setup.cfg
# packages/job_metrics/HISTORY.rst
# packages/job_metrics/setup.cfg
# packages/navigation/HISTORY.rst
# packages/navigation/setup.cfg
# packages/objectstore/HISTORY.rst
# packages/objectstore/setup.cfg
# packages/selenium/HISTORY.rst
# packages/selenium/setup.cfg
# packages/test_api/HISTORY.rst
# packages/test_api/setup.cfg
# packages/test_base/HISTORY.rst
# packages/test_base/setup.cfg
# packages/test_driver/HISTORY.rst
# packages/test_driver/setup.cfg
# packages/tool_util/HISTORY.rst
# packages/tool_util/setup.cfg
# packages/tours/HISTORY.rst
# packages/tours/setup.cfg
# packages/util/HISTORY.rst
# packages/util/setup.cfg
# packages/web_apps/HISTORY.rst
# packages/web_apps/setup.cfg
# packages/web_framework/HISTORY.rst
# packages/web_framework/setup.cfg
# packages/web_stack/HISTORY.rst
# packages/web_stack/setup.cfg
2023-10-23 18:01:52 +02:00
mvdbeek
e88541e645
Start work on 23.0.7.dev0
2023-10-23 18:01:40 +02:00
mvdbeek
bce8be24fe
Create version 23.0.6
2023-10-23 18:01:36 +02:00
mvdbeek
521405136a
Merge branch 'release_23.1' into dev
2023-07-29 12:28:41 +02:00
mvdbeek
c314336705
Merge branch 'release_23.0' into release_23.1
...
# Conflicts:
# lib/galaxy/version.py
# packages/app/HISTORY.rst
# packages/app/setup.cfg
# packages/auth/HISTORY.rst
# packages/auth/setup.cfg
# packages/config/HISTORY.rst
# packages/config/setup.cfg
# packages/data/HISTORY.rst
# packages/data/setup.cfg
# packages/files/HISTORY.rst
# packages/files/setup.cfg
# packages/job_execution/HISTORY.rst
# packages/job_execution/setup.cfg
# packages/job_metrics/HISTORY.rst
# packages/job_metrics/setup.cfg
# packages/navigation/HISTORY.rst
# packages/navigation/setup.cfg
# packages/objectstore/HISTORY.rst
# packages/objectstore/setup.cfg
# packages/selenium/HISTORY.rst
# packages/selenium/setup.cfg
# packages/test_api/HISTORY.rst
# packages/test_api/setup.cfg
# packages/test_base/HISTORY.rst
# packages/test_base/setup.cfg
# packages/test_driver/HISTORY.rst
# packages/test_driver/setup.cfg
# packages/tool_util/HISTORY.rst
# packages/tool_util/setup.cfg
# packages/tours/HISTORY.rst
# packages/tours/setup.cfg
# packages/util/HISTORY.rst
# packages/util/setup.cfg
# packages/web_apps/HISTORY.rst
# packages/web_apps/setup.cfg
# packages/web_framework/HISTORY.rst
# packages/web_framework/setup.cfg
# packages/web_stack/HISTORY.rst
# packages/web_stack/setup.cfg
2023-07-29 12:28:39 +02:00
mvdbeek
2fbbfd8417
Start work on 23.0.6.dev0
2023-07-29 12:28:35 +02:00
mvdbeek
af730bc6b5
Create version 23.0.5
2023-07-29 12:28:32 +02:00
Nate Coraor
8fee25f084
Merge branch 'release_23.1' into dev
2023-06-30 17:14:03 -04:00
Nate Coraor
ea07ddba98
Merge branch 'release_23.0' into release_23.1
...
# Conflicts:
# lib/galaxy/version.py
# packages/app/HISTORY.rst
# packages/app/setup.cfg
# packages/auth/HISTORY.rst
# packages/auth/setup.cfg
# packages/config/HISTORY.rst
# packages/config/setup.cfg
# packages/data/HISTORY.rst
# packages/data/setup.cfg
# packages/files/HISTORY.rst
# packages/files/setup.cfg
# packages/job_execution/HISTORY.rst
# packages/job_execution/setup.cfg
# packages/job_metrics/HISTORY.rst
# packages/job_metrics/setup.cfg
# packages/navigation/HISTORY.rst
# packages/navigation/setup.cfg
# packages/objectstore/HISTORY.rst
# packages/objectstore/setup.cfg
# packages/selenium/HISTORY.rst
# packages/selenium/setup.cfg
# packages/test_api/HISTORY.rst
# packages/test_api/setup.cfg
# packages/test_base/HISTORY.rst
# packages/test_base/setup.cfg
# packages/test_driver/HISTORY.rst
# packages/test_driver/setup.cfg
# packages/tool_util/HISTORY.rst
# packages/tool_util/setup.cfg
# packages/tours/HISTORY.rst
# packages/tours/setup.cfg
# packages/util/HISTORY.rst
# packages/util/setup.cfg
# packages/web_apps/HISTORY.rst
# packages/web_apps/setup.cfg
# packages/web_framework/HISTORY.rst
# packages/web_framework/setup.cfg
# packages/web_stack/HISTORY.rst
# packages/web_stack/setup.cfg
2023-06-30 17:14:03 -04:00
Nate Coraor
25b52a97f7
Start work on 23.0.5.dev0
2023-06-30 17:14:00 -04:00
Nate Coraor
03d9eb63b8
Create version 23.0.4
2023-06-30 17:13:57 -04:00
mvdbeek
bb65b07584
Merge branch 'release_23.1' into dev
2023-06-26 09:32:44 +02:00
mvdbeek
0b1a41bd86
Merge branch 'release_23.0' into release_23.1
...
# Conflicts:
# lib/galaxy/version.py
# packages/app/HISTORY.rst
# packages/app/setup.cfg
# packages/auth/HISTORY.rst
# packages/auth/setup.cfg
# packages/config/HISTORY.rst
# packages/config/setup.cfg
# packages/data/HISTORY.rst
# packages/data/setup.cfg
# packages/files/HISTORY.rst
# packages/files/setup.cfg
# packages/job_execution/HISTORY.rst
# packages/job_execution/setup.cfg
# packages/job_metrics/HISTORY.rst
# packages/job_metrics/setup.cfg
# packages/navigation/HISTORY.rst
# packages/navigation/setup.cfg
# packages/objectstore/HISTORY.rst
# packages/objectstore/setup.cfg
# packages/selenium/HISTORY.rst
# packages/selenium/setup.cfg
# packages/test_api/HISTORY.rst
# packages/test_api/setup.cfg
# packages/test_base/HISTORY.rst
# packages/test_base/setup.cfg
# packages/test_driver/HISTORY.rst
# packages/test_driver/setup.cfg
# packages/tool_util/HISTORY.rst
# packages/tool_util/setup.cfg
# packages/tours/HISTORY.rst
# packages/tours/setup.cfg
# packages/util/HISTORY.rst
# packages/util/setup.cfg
# packages/web_apps/HISTORY.rst
# packages/web_apps/setup.cfg
# packages/web_framework/HISTORY.rst
# packages/web_framework/setup.cfg
# packages/web_stack/HISTORY.rst
# packages/web_stack/setup.cfg
2023-06-26 09:32:42 +02:00
mvdbeek
1ef440e92c
Start work on 23.0.4.dev0
2023-06-26 09:32:37 +02:00
mvdbeek
b4adbb4ec5
Create version 23.0.3
2023-06-26 09:32:32 +02:00
mvdbeek
5413333aac
Merge branch 'release_23.0' into dev
...
# Conflicts:
# lib/galaxy/version.py
2023-06-13 17:58:26 +02:00
mvdbeek
414abff510
Start work on 23.0.3.dev0
2023-06-13 17:58:19 +02:00
mvdbeek
a7f0a365be
Create version 23.0.2
2023-06-13 17:58:13 +02:00
Matthias Bernt
aa9cc5b9e8
Start work on 23.1.dev0
2023-06-08 15:54:32 +02:00
Matthias Bernt
f722e122f7
Create version 23.0.1
2023-06-08 15:54:28 +02:00
Nicola Soranzo
4ca163b9ca
Add support for Python 3.11
...
- Update Python dependencies that didn't have a cp311 wheel: h5py and
psycopg2-binary.
- For packages for which there is no recent version that works on all
Python versions supported by Galaxy (numpy and scipy), replace old
requirement with multiple Python-version-specific requirements.
2023-02-02 01:18:25 +00:00
Nicola Soranzo
ee7d51f2f5
Merge branch 'release_22.05' into dev
2022-12-09 11:36:00 +00:00
mvdbeek
9c92c55a31
Reset all package HISTORY.rst file to 22.5.0.dev0
2022-12-08 13:24:06 +01:00
Nicola Soranzo
dda6feb391
Remove redundant license info from package READMEs
...
The license is already specified in `setup.cfg` , which is the
canonical place.
This will simplify the transition to the MIT license.
2022-09-09 17:20:24 +01:00
Michael R. Crusoe
59ac92c1c8
mark galaxy packages as containing typing information
2022-07-26 23:27:36 +01:00
Nicola Soranzo
26caab07d3
Modernise build of galaxy-web-stack package
2022-06-09 23:48:35 +01:00
Nicola Soranzo
73bf57e9a0
Remove unused and unnecessary code
...
- `PROJECT_OWNER`, `PROJECT_USERAME`, `RAW_CONTENT_URL` and `_version_re` are unused.
- `:changelog:` hyperlink target is unnecessary.
- `test_suite` and `tests_require` are deprecated since setuptools v41.5.0
2022-06-09 22:55:07 +01:00
mvdbeek