 James Taylor
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96f6ea514b
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Add support for bootstrap style tabs, use tabs in edit attributes form
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2012-07-20 14:53:30 -04:00 |
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James Taylor
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25325e9208
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Automated merge with https://bitbucket.org/galaxy/galaxy-central
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2012-07-19 13:56:48 -04:00 |
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Jeremy Goecks
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6a591eb48b
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Viz framework: bigwig fixes and remove unnecessary type casting.
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2012-07-19 10:59:20 -04:00 |
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James Taylor
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ccfc8ce3a7
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Automated merge with https://bitbucket.org/galaxy/galaxy-central
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2012-07-18 18:22:52 -04:00 |
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Jeremy Goecks
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9b2ec24928
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Reintroduce directionality indication to single-block features as it is again compatible with current code.
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2012-07-18 17:52:54 -04:00 |
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Jeremy Goecks
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be3f87204c
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Code cleanup using JSHint.
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2012-07-18 15:46:26 -04:00 |
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Jeremy Goecks
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55d0b2b751
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Fix Trackster bug that was erroneously fetching reference data. Pack script.
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2012-07-15 19:18:26 -04:00 |
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Jeremy Goecks
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ef753ff3f2
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Trackster: make sliders more responsive by waiting before drawing.
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2012-07-13 19:44:21 -04:00 |
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Jeremy Goecks
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e38c49ea15
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Tracks: make composite tracks compatible with recent Backbone enhancements and (b) whitespace cleanup.
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2012-07-13 17:55:29 -04:00 |
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Jeremy Goecks
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40a85af02f
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Use same colors for all tracks in parameter space viz.
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2012-07-12 19:05:48 -04:00 |
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Jeremy Goecks
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94927ee10a
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Pack script.
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2012-07-12 15:53:32 -04:00 |
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Jeremy Goecks
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2176031471
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Fix Trackster bug.
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2012-07-12 15:53:00 -04:00 |
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Jeremy Goecks
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efc17f5f5f
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Render all tracks in Circster using track preferences.
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2012-07-12 13:21:16 -04:00 |
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Jeremy Goecks
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aa4f9ae4e2
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Small viz tweaks.
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2012-07-11 13:19:23 -04:00 |
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Jeremy Goecks
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9894424833
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Add icon to set mode in paramamonster. Move chevron-expand icon from tracks CSS to base CSS.
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2012-07-10 11:31:41 -04:00 |
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Jeremy Goecks
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ca89711e1b
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Visualization framework enhancements: (a) support for unpacking complete genome/trackster visualizations and (b) Circster view now uses genome visualizations rather than individual datasets as model.
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2012-07-09 09:45:34 -04:00 |
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Jeremy Goecks
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d337f612a7
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Trackster bug fixes.
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2012-07-06 16:05:15 -04:00 |
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Jeremy Goecks
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389ca4df36
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Add introductory help text for paramamonster.
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2012-07-05 11:26:24 -04:00 |
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Jeremy Goecks
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5571ce52ea
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Make bookmarks available in shared Trackster visualizations.
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2012-07-05 09:31:19 -04:00 |
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Jeremy Goecks
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05d06eb46a
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Small fixes for 8fd408407f7e.
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2012-07-03 11:49:10 -04:00 |
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Jeremy Goecks
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f4d0e5b8f2
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Bug fixes and enhancements for paramamonster.
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2012-07-03 11:20:10 -04:00 |
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Jeremy Goecks
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4550023b2d
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Fix Trackster bug and remove debugging code. Pack scripts.
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2012-07-02 09:02:58 -04:00 |
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Jeremy Goecks
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3b08d37b98
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Enhancements to enable paramamonster to be used via accessible/published visualizations. Pack scripts.
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2012-07-01 22:04:40 -04:00 |
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Jeremy Goecks
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9399b018a6
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Prevent more than 10 jobs from being run at once in paramamonster. Additional paramamonster bug fixes as well.
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2012-07-01 19:03:16 -04:00 |
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Jeremy Goecks
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c7daf4a38f
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Enable scrolling for tiles area in parameter space visualization.
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2012-06-29 18:15:02 -04:00 |
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Jeremy Goecks
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5d4456146a
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Use Trackster as an entry point for parameter space visualization. Current viewing area, bookmarks, or both can be used as regions in parameter space visualization. Also handle multiple intervals well.
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2012-06-29 17:57:40 -04:00 |
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Jeremy Goecks
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efac106dca
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Trackster modifications to work with new tools API controller.
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2012-06-29 13:17:10 -04:00 |
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Jeremy Goecks
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87eccc903a
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Code cleanup from JSHint.
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2012-06-28 19:11:25 -04:00 |
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Jeremy Goecks
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7b0c49aff8
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Paramamonster polish: (1) size panels appropriately; (2) initialize tool form from saved data; (3) use constant for tile size; (4) bug fixes.
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2012-06-28 18:00:30 -04:00 |
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Jeremy Goecks
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baf5dc82ee
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Make it simpler to save/restore visualizations and enable saving/restoring of paramamonster visualizations.
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2012-06-28 15:48:50 -04:00 |
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Jeremy Goecks
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7d4aefe6be
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Update backbone-relational lib.
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2012-06-28 13:31:20 -04:00 |
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Jeremy Goecks
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bcd7dbdd66
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Add tipsy config to icon buttons and add tipsy to paramamonster.
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2012-06-27 12:12:43 -04:00 |
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Jeremy Goecks
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1061f1b281
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(a) Paramamonster implemention; (b) bug fixes and small additions to style sheets; and (c) bug fixes for rerunning tools on complete datasets.
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2012-06-27 10:51:20 -04:00 |
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James Taylor
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778855c02d
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merge
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2012-06-21 10:22:21 -04:00 |
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James Taylor
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8fe10216d4
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trackster: diagonal heatmap track type, for chromatin interactions. currently disabled because the data indexing is inefficient
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2012-06-21 10:17:07 -04:00 |
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Jeremy Goecks
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c1ea2ba186
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Visualization framework improvements.
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2012-06-15 17:43:54 -04:00 |
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Jeremy Goecks
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78a7b20ac5
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Viz framework: (a) JavaScript support for running tools and enhancements to parameter viz.
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2012-06-13 12:10:54 -04:00 |
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Jeremy Goecks
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f3066fc658
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Backbone-ify server-state deferred and use when running tools in Trackster.
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2012-06-08 15:36:02 -04:00 |
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Jeremy Goecks
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5deadd39cd
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Draw tiles based on region rather than tile index because it provides more flexibility.
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2012-06-07 17:43:22 -04:00 |
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Jeremy Goecks
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f8f06c3706
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Visualization infrastructure: (a) Backbone-ify cache and data managers; (b) push parameter value sampling code into Tool objects. Pack scripts.
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2012-06-07 16:47:06 -04:00 |
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Jeremy Goecks
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cc9381d436
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Foundation for parameter sweeping visualization.
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2012-06-05 17:10:23 -04:00 |
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Jeremy Goecks
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5ba3cb6553
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Place all JavaScript visualization code under static/scripts/viz directory.
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2012-06-04 12:26:52 -04:00 |
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Jeremy Goecks
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52d4e3f40d
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Fix compatibility issue with 9765176c63f7
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2012-05-30 18:09:26 -04:00 |
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Jeremy Goecks
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bc798cef1e
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Use backbone to save trackster visualizations.
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2012-05-30 16:37:51 -04:00 |
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Jeremy Goecks
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988313826f
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Fix bug in showing/hiding filters in Trackster.
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2012-05-30 09:39:59 -04:00 |
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Jeremy Goecks
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6572730fdd
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Visualization: (a) rename circos viz 'circster' and (b) foundational work for circster and backbone-visualization integration. Also pack scripts.
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2012-05-28 12:10:04 -04:00 |
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Jeremy Goecks
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97650ce691
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Partial implementation of Circos visualization using D3.
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2012-05-25 15:13:25 -04:00 |
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Jeremy Goecks
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54edaf8eaa
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Trackster: explicitly set tile height to avoid unneeded whitespace. Pack scripts.
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2012-05-22 12:37:51 -04:00 |
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Jeremy Goecks
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ba255221d3
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Trackster: better comments and help text.
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2012-05-21 12:42:53 -04:00 |
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Jeremy Goecks
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3371b095bc
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Update comments and coding conventions in Trackster code.
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2012-05-21 12:10:30 -04:00 |
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