galaxy

Partial implementation of Circos visualization using D3.

2012-05-25 15:13:25 -04:00

2012-06-15 17:43:54 -04:00

Visualization infrastructure: (a) Backbone-ify cache and data managers; (b) push parameter value sampling code into Tool objects. Pack scripts.

2012-06-07 16:47:06 -04:00

templates

Do not use template for tool panel label as it is overkill.

2012-04-16 21:49:05 -04:00

tools/rgenetics

moved the rgGRR svg scripts to static/scripts/tools/rgenetics and decreased chattiness in genetics.py

2009-10-15 19:01:07 -04:00

viz

Visualization framework improvements.

2012-06-15 17:43:54 -04:00

autocomplete_tagging.js

- Refactored tagging/autocomplete JS, fixing bugs regarding leaving the tagging box

2010-09-17 17:51:11 -04:00

blank.gif

Blank images needed by IE7.js for layout fixes.

2008-04-28 16:38:12 +00:00

checkbox_and_radiobutton.js

jquery.drag with touch support, trackster now works (well) on the ipad

2011-03-17 19:48:07 -04:00

excanvas.js

Workflows now work in Internet Explorer again. IE does not implement Array.indexOf so we define it in galaxy.base. Update excanvas

2010-10-22 18:23:47 -04:00

farbtastic.js

trackster: color picker for color track config params

2011-02-06 02:20:31 -05:00

galaxy.base.js

New tool menu generation using a JavaScript Backbone-based MVC framework. Framework principals are (a) event-based communication from model to view and (b) Backbone views act more as controllers with the HTML as the view itself. Tool menu generation and search are completely functional; recently used tools and tool tags are not yet implemented.

2012-04-01 18:19:11 -04:00

galaxy.panels.js

Create object to store Galaxy paths for use in JavaScript.

2012-04-10 19:06:24 -04:00

galaxy.ui.scrollPanel.js

Internet explorer fixes and support -- popup menus and dialogs work better on IE6+,

2008-08-22 17:47:43 -04:00

galaxy.workflow_editor.canvas.js

Fix heavy handed removal of PJAs when not using outputs.

2012-04-20 11:16:14 -04:00

helper_functions.js

jquery.drag with touch support, trackster now works (well) on the ipad

2011-03-17 19:48:07 -04:00

ie7-recalc.js

Move 'confirm' javascript up to base template (other scripts to be run on

2008-04-28 16:35:00 +00:00

IE7.js

Move 'confirm' javascript up to base template (other scripts to be run on

2008-04-28 16:35:00 +00:00

IE8.js

Move 'confirm' javascript up to base template (other scripts to be run on

2008-04-28 16:35:00 +00:00

jqtouch.js

Redo of iphone UI using jqtouch. All ajax now so it works as an app from the home screen without needing to load safari

2009-03-29 18:14:24 -04:00

jquery.autocomplete.js

Fix creating new trackster viz, fix autocomplete grouping by first character

2010-06-09 15:51:01 -04:00

jquery.cookie.js

sample tracking

2010-11-03 01:02:27 -04:00

jquery.dynatree.js

sample tracking

2010-11-03 01:02:27 -04:00

jquery.event.drag.js

jquery.drag with touch support, trackster now works (well) on the ipad

2011-03-17 19:48:07 -04:00

jquery.event.drag.js.patch

Completely purge jquery-ui. Panels and workflow editor now use jquery.event.[drag/drop]

2009-03-17 00:44:41 -04:00

jquery.event.drop.js

Update to jquery.event.[drag|drop] 2.0, fix panels, workflow editory, and trackster for compatibility

2011-01-29 20:51:55 -05:00

jquery.event.hover.js

Completely purge jquery-ui. Panels and workflow editor now use jquery.event.[drag/drop]

2009-03-17 00:44:41 -04:00

jquery.form.js

Update jQuery to 1.5.1, and also jquery.form as old one was incompatible with 1.5

2011-02-24 17:23:16 -05:00

jquery.js

Update to jQuery v1.7.1 and pack scripts.

2011-12-27 11:11:12 -05:00

jquery.mousewheel.js

trackster: capture horizontal mouse wheel events for scrolling (left right drags on mac touch pads)

2011-02-03 11:46:14 -05:00

jquery.rating.js

jquery.drag with touch support, trackster now works (well) on the ipad

2011-03-17 19:48:07 -04:00

jquery.tipsy.js

1) Jquery 1.4 again, with fixed tooltips; 2) Style changes for history, icons and editable text areas.

2010-03-01 12:01:50 -05:00

jquery.ui.sortable.slider.js

trackster: Fix refactor breaking bam tracks. Only show draggable handle in editor mode. Update jQuery UI to 1.8.5 and add slider widget

2010-10-12 15:24:41 -04:00

jquery.wymeditor.js

Added 'annotate history' functionality to pages. To accomplish this, refactored tagging from pure javascript to progressive javascript. Also fixed unicode and grid filtering bugs.

2009-12-08 18:49:06 -05:00

json2.js

update JSON2.js

2011-05-06 13:44:21 -04:00

jstorage.js

Use jStorage (http://www.jstorage.info/) instead of jStore. Tested to be working on IE7 and IE8, where the latter was failing. Fixes links not showing up in history pane to expand histories.

2011-02-18 15:06:34 -05:00

pack_scripts.py

Modify pack_scripts.py to (a) pack entire directory trees and (b) only pack if necessary. Add packed versions of many scripts.

2012-04-02 10:19:10 -04:00

timer.js

jquery.drag with touch support, trackster now works (well) on the ipad

2011-03-17 19:48:07 -04:00

ui.core.js

sample tracking

2010-11-03 01:02:27 -04:00