Commit Graph
1006 Commits
Author SHA1 Message Date
francoismg 7537d71714 added parcel-bundler as a dependency 2023-06-09 07:28:36 +02:00
francoismg 98f1442f45 aladin fits viewer integration prototype 2023-06-05 02:00:40 +02:00
Laila Los 3eb1072509 remove generated file from git 2023-05-05 13:02:06 +02:00
Greg Watson d914d5c289 Update @h5web to 7.1.0 2023-05-04 20:48:15 -04:00
Greg Watson ef11cb9f17 Fix linting and add type to input settings. 2023-05-04 20:48:15 -04:00
Greg Watson 27e613a7b0 Fix problems loading dataset in some instances. 2023-05-04 20:48:15 -04:00
Greg Watson 983f521ec7 Fix OpenAPI linting. Remove unused dependencies. 2023-05-04 20:48:15 -04:00
Greg Watson 8dc38e6e4c Add support for visualizing HDF5 datasets. This contribution is split into two parts: the visualization plugin and backend changes. The client code integrates the h5web visualizer into Galaxy (https://h5web.panosc.eu). The backend changes add the ability to access the contents of a dataset without needing to read the whole dataset, which is essential for large files. It is based on the h5grove API (https://github.com/silx-kit/h5grove). 2023-05-04 20:48:15 -04:00
Nate Coraor 0ac48236df Merge remote-tracking branch 'upstream/release_23.0' into dev 2023-03-10 09:11:54 -05:00
Mahendra Paipuri 710450fd9d Fix formatting errors 2023-03-08 20:28:56 -05:00
Mahendra Paipuri b65c3d0d75 Add galaxy prefix to shapefile path 2023-03-08 20:28:56 -05:00
Dannon Baker f80ec87a49 viz_base and reports app base styles, leaving toolshed alone for now pending the rewrite 2023-02-13 11:43:09 -05:00
Dannon Baker 73f2004044 Update description for phylocanvas 2023-02-07 09:29:32 -05:00
Dannon Baker f2ce00e05f Drop backbone, bootstrap, jquery, use basic alts 2023-02-07 08:47:21 -05:00
Dannon Baker 53255520d1 Set production build for phylocanvas.gl 2023-02-07 08:17:51 -05:00
Dannon Baker b7afee8eb5 Fix window resizing 2023-02-07 08:16:50 -05:00
Dannon Baker 3f54ff2f32 Revisit node manipulation later 2023-02-07 08:13:30 -05:00
Dannon Baker 9f7f903d2d Fix tree resizing 2023-02-07 08:12:36 -05:00
Dannon Baker 6d8b47c69b Fix node coloring 2023-02-07 08:07:42 -05:00
Dannon Baker 2d4c98c06c Phylocanvas initialization for new .gl 2023-02-07 07:58:50 -05:00
Dannon Baker b497c9bef9 Update available params for phylocanvas 2023-02-07 07:57:59 -05:00
Dannon Baker 6706a8cf63 Incremental progress redoing phylocanvas 2023-02-06 17:48:21 -05:00
Dannon Baker af632a6b61 Fix prefix handling in phylocanvas 2023-01-20 10:04:03 -05:00
Dannon Baker ee677ce5c8 Fix openlayers prefix handling 2023-01-20 09:43:32 -05:00
Dannon Baker 27340fe18b Fix prefix handling in msa 2023-01-20 09:31:52 -05:00
Dannon Baker 86420066d9 Fix prefix handling in drawrna 2023-01-20 09:26:43 -05:00
Dannon Baker 96d0b0585c Fix prefix handling in cytoscape 2023-01-20 09:24:12 -05:00
Dannon Baker 192586a5f2 Bug in annotate_image options handling 2023-01-20 09:02:50 -05:00
Dannon Baker f7dece8af3 Fix prefix handling in annotate_image 2023-01-20 08:59:48 -05:00
Dannon Baker dfb87ef9f9 Update, fix ngl visualization 2023-01-19 22:07:12 -05:00
Dannon Baker cb6df67bfa Fix redundant paths when not using prefix, causes lookup failure 2023-01-19 21:35:43 -05:00
Dannon Baker c03b2946e8 Fix dataset download_url access for pv viewer 2023-01-19 21:03:58 -05:00
mahendrapaipuri 624f603278 Simplify safe url construction 2022-12-09 19:53:43 -05:00
mahendrapaipuri 73a85e058c Add safe URL to download datasets
We need to prepend dataset.download_url with app root to get datasets
2022-12-09 19:53:43 -05:00
Matej Trojak eb0bfbd98b polish the code in mako template 2022-10-07 16:30:39 +02:00
Matej Trojak 95c80b4e27 Clean up code & get it working properly 2022-10-07 15:57:17 +02:00
Matej Trojak e007ba2cb3 Complete ts_visjs package build 2022-10-06 21:49:21 +02:00
Matej Trojak 7370253244 Separated mako template to JS script and CSS styles 2022-10-06 21:43:56 +02:00
Matej Trojak f4b366c8c9 Add static icons 2022-10-06 21:42:05 +02:00
Matej Trojak 2d2f268346 Init files 2022-10-06 17:13:29 +02:00
David López fff7d7f0fa Merge pull request #14437 from reid-wagner/history_contents_fix
Fix path for history contents API request.
2022-08-12 10:21:52 +02:00
Reid Wagner dd0c992a2a Fix path for history contents API request. 2022-08-11 11:48:05 -05:00
Dannon Baker 2d86fb40a8 Drop defunct msa artifacts 2022-07-05 09:55:51 -04:00
Dannon Baker aa9ba99f84 Modernization of restored msa wrapper 2022-07-05 09:48:14 -04:00
Dannon Baker 663f4f9770 MSA visualization fix and future proofing. 2022-07-05 09:39:04 -04:00
Dannon Baker f0e69aaac5 Fix a bug in PCA artifact staging that prevents a plugin rebuild.
Without `-p` mkdir will error out if the path exists, killing the build.
2022-06-22 07:15:37 -04:00
Martin Cech f3c8633f6c add a hack to navigate around FF bug 2022-05-02 15:10:35 +02:00
Matej Trojak eaeebb99e0 Create static/dist location 2022-04-20 13:39:34 +02:00
Martin Cech a83be9ab1f move the js dependencies to npm local build 2022-04-20 12:55:35 +02:00
Matej Trojak cc90a8b1af Improved plot styles 2022-04-20 10:19:20 +02:00