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Update, fix ngl visualization

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This commit is contained in:
Dannon Baker
2023-01-19 22:07:12 -05:00
parent cb6df67bfa
commit dfb87ef9f9
1 changed files with 20 additions and 14 deletions
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config/plugins/visualizations/ngl/src/ngl.js
+20 -14
View File
@@ -1,31 +1,37 @@
import * as ngl from "./viewer";
/** Get boolean as string */
function asBoolean (value) {
function asBoolean(value) {
return String(value).toLowerCase() == "true";
}
/* This should be part of the charts/viz standard lib */
const slashCleanup = /(\/)+/g;
function prefixedDownloadUrl(root, path) {
return `${root}/${path}`.replace(slashCleanup, "/");
}
window.bundleEntries = window.bundleEntries || {};
window.bundleEntries.load = function (options) {
var dataset = options.dataset,
settings = options.chart.settings,
stage = new ngl.Stage(options.target, { backgroundColor: settings.get("backcolor") }),
representation_parameters = {},
stage_parameters = {};
representation_parameters = {
const dataset = options.dataset;
const settings = options.chart.settings;
const stage = new ngl.Stage(options.target, { backgroundColor: settings.get("backcolor") });
const representationParameters = {
radius: settings.get("radius"),
assembly: settings.get("assembly"),
color: settings.get("colorscheme"),
opacity: settings.get("opacity"),
};
stage_parameters = { ext: dataset.extension, defaultRepresentation: true };
const safe_download_url = `${options.root}${dataset.download_url}`;
const stageParameters = { ext: dataset.extension, defaultRepresentation: true };
try {
stage.loadFile(safe_download_url, stage_parameters).then(function (component) {
component.addRepresentation(settings.get("mode"), representation_parameters);
options.chart.state("ok", "Chart drawn.");
options.process.resolve();
});
stage
.loadFile(prefixedDownloadUrl(options.root, dataset.download_url), stageParameters)
.then(function (component) {
component.addRepresentation(settings.get("mode"), representationParameters);
options.chart.state("ok", "Chart drawn.");
options.process.resolve();
});
} catch (e) {
options.chart.state("failed", "Could not load PDB file.");
options.process.resolve();