Martin Cech
76fc6becd6
add text highlights
2015-11-20 10:30:04 -05:00
Martin Cech
cf16e2c7d3
add bitbucker deprecation notice
2015-11-20 10:27:59 -05:00
Martin Cech
4f4526bc30
deprecate old Data Libraries
2015-10-14 18:36:53 -04:00
John Chilton
b7bf42e1b4
Fill in release notes for 15.10.
2015-10-14 17:05:06 +01:00
John Chilton
bbef5ed737
Improvements to release notes generation.
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- Add last commit for 15.10 (need to automate finding that).
- Generate next release annoucement.
- Generate annoucement for this release.
- Respect the minor tag.
2015-10-14 17:04:49 +01:00
John Chilton
cf59e8bd3c
Merge pull request #913 from blankenberg/cut_15.10
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[15.10] Fix command quoting and remove size from text input for Cut tool.
2015-10-14 15:45:36 +01:00
Daniel Blankenberg
120ec61264
Fix command quoting and remove size from text input for Cut tool.
2015-10-14 10:11:21 -04:00
John Chilton
ee42fd0531
Merge pull request #910 from carlfeberhard/release_15.10
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[15.10] Some minor fixes to the history UI
2015-10-14 14:47:01 +01:00
carlfeberhard
03c7aae512
UI, histories: disable user-select on dataset selectors to prevent text select/highlight when using shift to select a range
2015-10-13 17:25:50 -04:00
carlfeberhard
41069e8ba6
UI, histories: fix/reverse order for drag and drop dataset copy
2015-10-13 17:15:56 -04:00
carlfeberhard
34a11d1187
UI, histories: fix default empty message for lazy loaded panels in multi-view
2015-10-13 16:49:38 -04:00
carlfeberhard
99fab6f342
UI, histories: on first history search, use current searchFor value at callback and not value when ajax began
2015-10-13 16:16:43 -04:00
carlfeberhard
b470843c89
UI, histories: fix multiview button to be logged-in users only
2015-10-13 15:41:21 -04:00
Dannon Baker
6c5f6e3f69
Merge pull request #878 from martenson/datalib-fixes-release
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[15.10] Release Fixes for Data Libraries
2015-10-12 15:59:12 -04:00
Dannon Baker
38b9ca3400
Merge pull request #879 from blankenberg/datamanager-fix
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[15.10] Fix for no longer being able to access data managers.
2015-10-08 16:15:00 -04:00
Daniel Blankenberg
90506ba1c6
Fix for no longer being able to access data managers. Have datamanager links point to root with tool_id provided while targeting a new window.
2015-10-08 15:39:25 -04:00
Martin Cech
251f390f7c
fix the ordering of folder controls to match library's
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also fix the active area of 'include deleted' checkbox
2015-10-08 15:25:32 -04:00
Martin Cech
fe8dbd8183
fix problems with multiple bindings of view events;
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drop attempts at caching the libraries - need to study more for that
2015-10-08 15:25:31 -04:00
Martin Cech
775ee33d4d
fix options default order to fix bug with improper page being rendered
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also add missing comma for previous commit
2015-10-08 15:25:31 -04:00
Martin Cech
39f5b7adf1
show proper message when search has no results
2015-10-08 15:25:31 -04:00
Martin Cech
2d4bd2e6f5
fix the ordering and margins of lib toolbar items
2015-10-08 15:25:31 -04:00
Martin Cech
60a1b45704
make lib search case insensitive
2015-10-08 15:25:31 -04:00
Daniel Blankenberg
a0ad2b75c2
Merge pull request #873 from erasche/api-key-backpatch
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[release_15.10] Expose all API keys to admins under REMOTE_USER
2015-10-08 12:19:31 -04:00
Eric Rasche
4705409d38
Expose all API keys to admins under REMOTE_USER
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This is the default setting for non-remote-user setups, this commit
adjusts the middleware to behave as expected.
Issue raised in http://dev.list.galaxyproject.org/User-API-keys-with-External-LDAP-authentication-disabled-td4668052.html
2015-10-08 10:22:41 -05:00
Björn Grüning
69cd5a98dc
Merge pull request #854 from carlfeberhard/release_15.10
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[15.10] UI, Collections: allow expansion to fetch details for DatasetDCEs (as…
2015-10-06 18:29:37 +02:00
carlfeberhard
31c89ea29c
UI, Collections: allow expansion to fetch details for DatasetDCEs (assuming they're HDAs); move rerunnable and creating_job fetch to HDAs
2015-10-06 09:49:16 -04:00
Nate Coraor
cc23adb0a9
Merge pull request #843 from jmchilton/text_file_busy_2
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Allow reuse of parent /tmp directory in dockerized testing.
2015-10-06 00:02:07 -04:00
Nate Coraor
b5b36c0ab1
Merge pull request #849 from erasche/gie-pinning-15.10
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GIE pinning 15.10
2015-10-06 00:00:28 -04:00
Daniel Blankenberg
092fc17ec0
Merge pull request #846 from jmchilton/ucsc_cleanup
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UCSC Tool Cleanup
2015-10-05 17:05:56 -04:00
Martin Cech
f90c49e270
Merge pull request #847 from jmchilton/citations_5
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Add more distribution tool citations.
2015-10-05 17:01:18 -04:00
Dannon Baker
3201005739
Merge pull request #850 from martenson/forgotten-minification
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forgoten minification and map
2015-10-05 16:21:22 -04:00
Martin Cech
053f51eb53
forgoten minification and map
2015-10-05 16:16:23 -04:00
Eric Rasche
e9a3ec95b9
Update faq.rst
2015-10-05 14:51:51 -05:00
Eric Rasche
5f4502b650
Pin images for next release of Galaxy
2015-10-05 14:50:35 -05:00
John Chilton
4cd4dac0a0
Merge pull request #848 from jmchilton/echo_remove
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Remove unused echo tool
2015-10-05 20:44:56 +01:00
Martin Cech
753bb9de0f
Merge pull request #839 from jmchilton/text_file_busy
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Attempt to fix "Text file busy" errors (testing and production)
2015-10-05 14:57:16 -04:00
Martin Cech
bb43ace509
Merge pull request #842 from bgruening/filter_by_attribute
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Update documentation for the gff_filter_by_attribute tool
2015-10-05 14:55:30 -04:00
Björn Grüning
3687d45a03
Merge pull request #838 from nsoranzo/pkg_resources
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Use eggs.require() instead of pkg_resources in lib/galaxy/datatypes/ .
2015-10-05 20:37:51 +02:00
Dannon Baker
0a83a244f1
Merge pull request #844 from jmchilton/run_test_adjustments
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More small adjustments to test script.
2015-10-05 14:35:54 -04:00
Björn Grüning
6430b9c4e8
Update documentation for the gff_filter_by_attribute tool
2015-10-05 18:43:36 +02:00
John Chilton
a6f9e62c1a
Add citations to ucsc browser tools.
2015-10-05 15:55:21 +01:00
John Chilton
1aebbc3f68
Remove likely broken UCSC proxy and associated tools.
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Unused for many, many years and likely no longer works.
2015-10-05 15:55:21 +01:00
carlfeberhard
7dcd2636fd
Merge pull request #820 from martenson/lib-search
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Initial implementation of data library search
2015-10-05 10:39:15 -04:00
Eric Rasche
f50702f962
Remove unused echo tool
2015-10-05 15:21:39 +01:00
John Chilton
88239abf5c
Add more distribution tool citations.
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xref #361 .
2015-10-05 15:16:50 +01:00
John Chilton
591519009b
Add citations to a few more tools.
2015-10-05 15:12:46 +01:00
Martin Cech
51a3f54140
Merge pull request #841 from dannon/default_debug_off
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Update comment in sample.
2015-10-05 10:12:31 -04:00
Dannon Baker
e3364d6db4
Update comment in sample.
2015-10-05 10:11:03 -04:00
Martin Cech
a92ed830ee
Merge pull request #840 from dannon/default_debug_off
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Swap debug mode to be off by default in galaxy.ini.sample.
2015-10-05 10:06:18 -04:00
Dannon Baker
1564dc665b
Swap debug mode to be off by default in galaxy.ini.sample.
2015-10-05 10:01:08 -04:00
Martin Cech