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16 Commits
Author SHA1 Message Date
Nicola Soranzo f9384bb0df Disallow pydantic 2.6.0 and 2.6.1 
xref: https://github.com/pydantic/pydantic/issues/8760

Fix the following error when testing with mypy:

```
$ tox -e mypy
Deferral trace:
    cwltool.utils:62
    cwltool.utils:-1
    ...
    galaxy.model:666
    galaxy.model:666
    galaxy.model:666
    galaxy.model:666
lib/galaxy/model/__init__.py: error: INTERNAL ERROR: maximum semantic analysis
iteration count reached
Found 1 error in 1 file (errors prevented further checking)
```
 2024-02-14 00:57:47 +00:00
mvdbeek b278d8a2aa Merge branch 'release_23.2' into dev 2024-02-08 11:35:49 +01:00
John Davis ac15c87379 Update package versions to 23.2.dev0 
Update setup.cfg, HISTORY.rst.
Make all dev package versions consistent.
 2024-02-01 22:50:21 -05:00
Ubuntu 6860c9a0fb Add support for Python 3.12 2024-01-21 11:57:59 +00:00
mvdbeek e63c3ba9d4 Update fastapi and pydantic dependencies 2024-01-08 11:33:34 +01:00
Michael R. Crusoe c00967cca4 Python 3.8 as new minimum version 
Fixes: https://github.com/galaxyproject/galaxy/issues/16394

Also upgrade code to Python 3.8 syntax with:

```
ack --type=python -f | grep -v '^lib/galaxy/schema/bco/\|^lib/galaxy/schema/drs/\|lib/tool_shed_client/schema/trs.*.py\|^tools/\|^.venv/\|^.tox/' | grep -v '^lib/galaxy/files/sources/\|^lib/galaxy/job_metrics/\|^lib/galaxy/objectstore/\|^lib/galaxy/tool_util/\|^lib/galaxy/util/' | xargs pyupgrade --py38-plus
```
 2023-11-26 18:34:09 +00:00
Nate Coraor 2ca678482f Merge remote-tracking branch 'upstream/release_23.0' into release_23.1 2023-06-30 15:56:50 -04:00
Nate Coraor ab1e0485d7 Pin pydantic in packages to <2 2023-06-30 14:51:18 -04:00
mvdbeek 1ef440e92c Start work on 23.0.4.dev0 2023-06-26 09:32:37 +02:00
mvdbeek b4adbb4ec5 Create version 23.0.3 2023-06-26 09:32:32 +02:00
mvdbeek 414abff510 Start work on 23.0.3.dev0 2023-06-13 17:58:19 +02:00
mvdbeek a7f0a365be Create version 23.0.2 2023-06-13 17:58:13 +02:00
Matthias Bernt aa9cc5b9e8 Start work on 23.1.dev0 2023-06-08 15:54:32 +02:00
Matthias Bernt f722e122f7 Create version 23.0.1 2023-06-08 15:54:28 +02:00
Nicola Soranzo 4ca163b9ca Add support for Python 3.11 
- Update Python dependencies that didn't have a cp311 wheel: h5py and
  psycopg2-binary.
- For packages for which there is no recent version that works on all
  Python versions supported by Galaxy (numpy and scipy), replace old
  requirement with multiple Python-version-specific requirements.
 2023-02-02 01:18:25 +00:00
John Chilton db68ac271d Decouple galaxy-app and galaxy-selenium. 
That was a lazy shortcut on my part and should have never happened.

This resolves that and also another task on my todo list of making an easily pip installable, lightweight way of getting access to the tours validation script at the same time by restructuring packages and cleaning up the dependency structure.

The navigation piece of galaxy-selenium has been split out of into its own package and tours now depend on that directly. In order to have that lightweight access to the tour validation code - tours have also been split out of app. This will also encourage that package to continue to be decoupled nicely from the larger galaxy-app package.
 2022-06-27 12:56:22 -04:00