 Greg Von Kuster
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71d16671bc
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First pass at final phase of cleaning up approach to dynamic select lists. Added a functional test to phastOdds tool. The following tools now use this latest approach to dynamic optioons:
axt_to_fasta, phastOdds, axt_to_lav, random_intervals, extractAxt_wrapper, axt_to_concat_fasta, aggregate_binned_scores.
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2007-11-16 20:08:31 +00:00 |
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Daniel Blankenberg
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3ed0408b17
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Have interval readers ignore comments as well as headers.
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2007-08-13 15:20:19 +00:00 |
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Daniel Blankenberg
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868c5a26b2
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Update GenomicIntervalReader using tools to use NiceReaderWrapper.
Bad lines are silently ignored.
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2007-08-03 15:18:24 +00:00 |
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Daniel Blankenberg
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e427f3445b
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Minor Update to Gencode paritioning. Only affects datasets which do not overlap with provided partions (i.e. non-encode regions)
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2007-07-12 20:27:52 +00:00 |
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Daniel Blankenberg
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78a71d31e3
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Fix for random_intervals and other tools using bx.intervals.io.GenomicIntervalReader.
Header lines are no longer requested.
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2007-07-02 15:28:46 +00:00 |
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Ian Schenck
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77f1195f7a
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Changed trans->app.
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2007-05-31 20:31:28 +00:00 |
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Daniel Blankenberg
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059a63ece7
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Allow gencode partitioning to work across the cluster.
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2007-05-09 18:18:02 +00:00 |
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Daniel Blankenberg
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c7f6284136
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Remove extraneous comment
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2007-03-15 20:35:48 +00:00 |
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Daniel Blankenberg
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cc4d6934bd
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Random Intervals update.
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2007-03-15 20:31:09 +00:00 |
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Nate Coraor
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7ac51f24fc
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All of the stuff in /cache has been moved to /depot/data2.
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2007-03-13 21:27:39 +00:00 |
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Daniel Blankenberg
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ee04a832dd
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Random intervals bug fixes.
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2007-03-12 16:23:55 +00:00 |
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James Taylor
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f788a34fca
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Moving james-wsgi branch to new trunk.
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2006-11-15 16:28:21 +00:00 |
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