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Allow gencode partitioning to work across the cluster.

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Daniel Blankenberg
2007-05-09 18:18:02 +00:00
parent bf5bfd7cb1
commit 059a63ece7
2 changed files with 2 additions and 2 deletions
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tools/encode/gencode_partition.xml
+1 -1
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@@ -1,6 +1,6 @@
<tool id="gencode_partition1" name="Gencode Partition">
<description>partition an interval file</description>
<command interpreter="python2.4">split_by_partitions.py /home/james/work/encode/feature_partitions/partition_list.txt $input1 $out_file1 $input1_chromCol $input1_startCol $input1_endCol $input1_strandCol</command>
<command interpreter="python2.4">split_by_partitions.py /home/universe/encode_feature_partitions/partition_list.txt $input1 $out_file1 $input1_chromCol $input1_startCol $input1_endCol $input1_strandCol</command>
<inputs>
<param name="input1" type="data" format="interval" label="File to Partition"/>
</inputs>
tools/encode/split_by_partitions.py
+1 -1
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@@ -12,7 +12,7 @@ from bx.bitset_builders import *
partition_index = sys.argv[1]
partition_offset = "/home/james/work/encode/feature_partitions/" #should parse perhaps from index filepath
partition_offset = "/home/universe/encode_feature_partitions/" #should parse perhaps from index filepath
warnings = []