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Author SHA1 Message Date
John Chilton 69b01ac0e8 Utilities for higher level composite tests in test_model_store. 2024-01-25 10:03:44 -05:00
John Chilton 3a71150819 Minimal test case demonstrating model stores break on implicit conversions. 2024-01-25 09:32:40 -05:00
John Chilton 936a35d90d More de-duplication in test_model_store.py. 2024-01-25 09:32:35 -05:00
John Chilton 24d215c9e7 Reduce duplication in test_model_store. 2024-01-24 11:11:16 -05:00
Ahmed Hamid Awan 726e648265 Merge pull request #17318 from Renni771/port-history-panel-to-composition-api-and-typescript 
Port HistoryPanel component to composition API and typescript
 2024-01-23 23:19:40 +05:00
Marius van den Beek 9f467d4c6d Merge pull request #17340 from nsoranzo/flake8-bugbear_24.1.17 
Fixes for flake8-bugbear 24.1.17
 2024-01-23 11:52:29 +01:00
Nicola Soranzo 0e7b0eb83b Extend .venv paths to ignore 
Useful when creating virtual environments for several Python versions
(e.g. `.venv38`, `.venv312`), which otherwise are linted by tools like
black, isort and flake8.
 2024-01-22 20:33:47 +00:00
Nicola Soranzo 12ad482d66 Fix B038 errors reported by flake8-bugbear 24.1.17 2024-01-22 20:33:47 +00:00
Nicola Soranzo fd5102dd1d Fix B036 errors reported by flake8-bugbear 24.1.17 2024-01-22 20:33:46 +00:00
Ahmed Awan e14df587c8 convert related filter to int to compare with item.hid 2024-01-23 00:44:04 +05:00
Nicola Soranzo a11f77d4be Merge pull request #17335 from davelopez/fix_quotas_id_encoding 
Fix quotas ID encoding
 2024-01-22 18:34:38 +00:00
davelopez 0618dd8478 Add test to check quota IDs are encoded correctly 2024-01-22 17:57:55 +01:00
davelopez 0b4df0f37b Fix quotas id encoding 2024-01-22 12:23:56 +01:00
Marius van den Beek 6d58253b53 Merge pull request #16796 from tuncK/py3_12 
Add support for Python 3.12
 2024-01-22 08:48:32 +01:00
Nicola Soranzo 9978004f34 Fix tests after Python 3.12 changes for comprehensions 2024-01-21 20:46:09 +00:00
Ubuntu 6860c9a0fb Add support for Python 3.12 2024-01-21 11:57:59 +00:00
Nicola Soranzo 4eb94cde5f Install future from my fork with Python 3.12 patches 2024-01-21 11:57:58 +00:00
Nicola Soranzo 30a6aab6c9 Workaround `ImportError for importlib.resources.Anchor` 
xref: https://github.com/python/cpython/issues/113238
 2024-01-21 10:31:16 +00:00
Nicola Soranzo 76e566d1e1 Fix E231 flake8 error in f-string 2024-01-21 10:31:16 +00:00
Ubuntu cc878ba75f Update comments 2024-01-20 22:12:06 +00:00
Björn Grüning 5f25a48ac9 Merge pull request #17311 from bgruening/s3fs-templating 
[23.2] fix s3fs templating
 2024-01-20 10:56:38 +01:00
Björn Grüning 7e394f7aed Merge pull request #17327 from PlushZ/doc-data-source 
add documentation for data source tool
 2024-01-19 19:34:36 +01:00
nuwang 000246826e Also pop bucket name during get and write to filesource 2024-01-19 22:50:07 +05:30
PlushZ a2ed0c08e5 add doc for data source 2024-01-18 18:36:14 +01:00
John Davis 9f4254f66b Merge pull request #17322 from mvdbeek/session_docs 
Document SQLAlchemy session lifespan
 2024-01-18 12:35:27 -05:00
Rendani Gangazhe dc3adfdecc Format code 2024-01-18 17:49:16 +01:00
Martin Cech 546b994a46 Merge pull request #17228 from jmchilton/markdown_help_distinction 
Overhaul Galaxy Markdown Help
 2024-01-18 16:52:54 +01:00
Martin Cech afd4ccaad7 Merge pull request #17238 from ElectronicBlueberry/form-data-extension-view 
Add accepted extensions to form data input
 2024-01-18 16:47:10 +01:00
Marius van den Beek 684a038c48 Merge pull request #17298 from ElectronicBlueberry/panel-resize-followup 
Adjust  Flex Panel Drag Handle and Collapse Button
 2024-01-18 16:40:56 +01:00
Marius van den Beek 0744959008 Fix typo 2024-01-18 16:31:26 +01:00
Marius van den Beek 0e4f6fed84 Drop extra newline 2024-01-18 16:30:20 +01:00
Marius van den Beek b367c09ae1 Don't explain why handling state at the outermost layer is a good idea 2024-01-18 16:30:02 +01:00
mvdbeek 7f2b8a714f Tweak the WSGI, ASGI, Celery section 2024-01-18 16:28:37 +01:00
John Davis 2e9c2241d0 Apply edits to session docs 2024-01-18 16:23:53 +01:00
Rendani Gangazhe 8d2ad5c80e Merge branch 'galaxyproject:dev' into port-history-panel-to-composition-api-and-typescript 2024-01-18 16:13:00 +01:00
Marius van den Beek f12984bf37 Merge pull request #17324 from pcm32/patch-13 
Enable job resubmissions in k8s runner
 2024-01-18 14:59:45 +01:00
Laila Los 4409b24e7f fully remove drag handle overlap with panel 2024-01-18 13:23:02 +01:00
mvdbeek e02a765b7b Merge branch 'release_23.2' into dev 2024-01-18 12:23:00 +01:00
mvdbeek ed98d7d21a Document SQLAlchemy session lifespan 2024-01-18 12:21:56 +01:00
Rendani Gangazhe a94add7ace Remove stubs in HistoryView component test to make tests work 2024-01-18 11:56:59 +01:00
Bjoern Gruening 29d7820cb3 fix linting 2024-01-18 11:42:17 +01:00
Bjoern Gruening a75422d9c8 ls() can not handle the bucket in its arguments 2024-01-18 11:38:59 +01:00
nuwang 7392c6b70d Move _bucket initializer to open_fs, following GoogleCloudStorageFilesSource 2024-01-18 11:36:30 +01:00
Björn Grüning 625ae9700f bucket needs special handling 2024-01-18 11:36:30 +01:00
Björn Grüning 488d2838e9 Update s3fs.py 2024-01-18 11:36:30 +01:00
Björn Grüning 89f02ff060 fix s3fs templating 2024-01-18 11:36:30 +01:00
Rendani Gangazhe cfee0658f9 Adjust HistoryPanel code style. 
* Handle promises that throw.
* Extract `HistoryCounter` component function type
* Inline `onError` function call
* Add types to `updateFilterValue` function
 2024-01-18 10:39:31 +01:00
John Davis 064360dab0 Merge pull request #17319 from mvdbeek/scope_out_monitor_loop 
[23.2] Scope session for job  runner monitor loop
 2024-01-17 13:31:40 -05:00
mvdbeek e55a09955b Scope session for job runner monitor loop 
I think this is as closed as we can get to
```
try:
    <use session>
    session.commit()
except:
   session.rollback()
   raise
finally:
   session.close()  # optional, depends on use case
```
mentioned in https://docs.sqlalchemy.org/en/14/faq/sessions.html#this-session-s-transaction-has-been-rolled-back-due-to-a-previous-exception-during-flush-or-similar
 2024-01-17 18:19:04 +01:00
John Davis b9ba44bc10 Merge pull request #17315 from mvdbeek/backport_23.2_pendingrollbackerror2 
[23.2] Backport Rollback invalidated transaction: catch them earlier
 2024-01-17 09:28:08 -05:00