Martin Cech
23d3606518
open citation url in _blank (prevents browser's insecure content error messages while trying to open in the middle pane - https vs http)
2014-11-13 14:41:49 -05:00
John Chilton
1677e15a11
Bugfix renaming individual parts of pairs.
...
From Carl: "Yeah - that looks fine for stable. A better fix is probably adding the pair index directly into the DOM and getting it there - I'll add that to the 'Iteration 2' card. I'll approve now if you want to do the request."
2014-11-10 10:07:56 -05:00
Carl Eberhard
e77f7b2591
Fix: regenerate dataset-model urls on fetch even when silent
2014-11-04 09:51:53 -05:00
Jeremy Goecks
c11e61acbd
Trackster: make comparisons explicit when testing for track statistical data.
2014-09-30 13:20:52 -04:00
Martin Cech
85f89f3d89
select2 fixes and impl. of missing feature import from path
2014-09-26 15:17:35 -04:00
John Chilton
ad25fd627a
Grunting at the scripts.
2014-09-25 13:49:04 -04:00
Jeremy Goecks
8ba9d93b45
Fix dataset loading in Scratchbook: if dataset is tabular, load dynamically without iframe; otherwise load into iframe.
2014-09-24 13:26:55 -04:00
Nate Coraor
ce110b5a35
Merged in martenson/galaxy-merging/next-stable (pull request #504 )
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[NEXT-STABLE] merge of JS changes from #stable
2014-09-24 11:20:22 -04:00
Carl Eberhard
fd522174bc
Fixes to current dataset indicator and focused icon buttons
2014-09-24 09:49:41 -04:00
Martin Cech
fcd1cb9aae
trying to merge stable->next stable, this should take care of changes due to build process affecting the stable commit
2014-09-23 10:56:26 -04:00
Aysam Guerler
c18f13c85c
ToolForm/Ui: Improve and extend option fields, add dataset/collection selector
2014-09-19 12:47:17 -04:00
Aysam Guerler
46e0faf830
Merge
2014-09-18 14:58:12 -04:00
Aysam Guerler
b23b946fd1
Ui: Fix option fields
2014-09-18 14:57:46 -04:00
Martin Cech
014d7f5150
Merge
2014-09-18 14:49:20 -04:00
Martin Cech
04768143d2
tweaks to UI for library import, also added ext types and genome selection
2014-09-18 14:48:50 -04:00
Aysam Guerler
59369ff3a1
ToolForm: Fix subsection creation
2014-09-18 14:07:44 -04:00
Martin Cech
06f743ff88
removed the fix setting min-width to all select2 containers, I believe it is unnecessary with width: 'resolve' and dropdownAutoWidth: true settings
2014-09-18 12:45:04 -04:00
Carl Eberhard
9754576eb7
History panel, current: highlight focused/active/current item, set active item on 'display,edit,rerun,info/params,visualize,report-error', cache scroll position in sessionstorage and re-render at same, allow list-panel.scrollTo to be animated and given a speed
2014-09-18 12:33:52 -04:00
Carl Eberhard
422ab1220f
Client build: remove potentially confusing copy of pack_scripts.py from client/galaxy/scripts; remove unused packed
2014-09-18 10:00:11 -04:00
Dannon Baker
7475d1a1cf
Client build.
2014-09-17 21:18:53 -04:00
Dannon Baker
ad76d7e2ac
Client build.
2014-09-17 21:03:46 -04:00
Dannon Baker
0001b2caf2
Pack scripts.
2014-09-17 20:41:50 -04:00
Aysam Guerler
a25599618e
ToolForm: Fix style
2014-09-17 18:35:14 -04:00
Aysam Guerler
4f93c54fe9
ToolForm: Revision of repeat blocks, Ui: Fixes and improvements
2014-09-17 18:17:52 -04:00
Martin Cech
c9bd294bff
with John's help - this includes changed wording in user messages & errors to be more formal / no smilies :( /
2014-09-17 00:06:28 -04:00
Martin Cech
eafd9aad90
Merge
2014-09-16 18:03:05 -04:00
Martin Cech
ad43c62927
jstree refactoring, removed from global space, documentation to library imports, general JS cleanup
2014-09-16 18:02:12 -04:00
Carl Eberhard
ecea8af0a9
Client build system: add 'grunt watch' command: automatically copies files from client/galaxy/scripts/ to static/scripts when they change in client/galaxy/scripts; add some missing files and pack scripts
2014-09-16 13:42:40 -04:00
Martin Cech
4dbb249ca6
removed bug with missing return
2014-09-16 13:15:32 -04:00
Martin Cech
3cc0b971d1
trying to merge
2014-09-16 11:56:13 -04:00
Martin Cech
2b0cda6bbe
Merge
2014-09-16 11:40:08 -04:00
Martin Cech
7b67fe13db
allow admins to paste paths, pack scripts
2014-09-16 11:39:17 -04:00
Dannon Baker
d869a18c5e
Merged in natefoo/galaxy-central (pull request #495 )
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Clean up the root directory and rename universe_wsgi.ini
2014-09-16 09:08:35 -04:00
Aysam Guerler
1a307de0b6
Ui: Add packed script, fix attributes
2014-09-16 02:42:09 -04:00
Aysam Guerler
ce679acf89
Ui: Unify checkboxes and radio buttons, extend functionality, Upload: Fix code style, ToolForm: Extend dataset filtering
2014-09-16 01:46:17 -04:00
Nate Coraor
8fadc6392b
Rename universe_wsgi.ini -> galaxy.ini everywhere.
2014-09-15 16:43:51 -04:00
Dannon Baker
48dbd1f4a5
Pack scripts.
2014-09-12 19:47:00 -04:00
Dannon Baker
7ac2ae2f6d
Prevent double submission of workflow.
2014-09-12 19:45:06 -04:00
Carl Eberhard
373093aa93
Fix to 618b02d13329: remove console, add documentation
2014-09-11 14:11:37 -04:00
Carl Eberhard
e1ec150da7
History panels: allow foldout display of collections in display_by_slug, pages, and /view
2014-09-11 12:23:00 -04:00
Aysam Guerler
b692c0ebf3
ToolForm: Implements error handling, applies fixes to styles and structure, UI: Fixes code style for frames
2014-09-11 12:02:21 -04:00
Carl Eberhard
04b72d65f8
Cleanup b0c8da2
2014-09-08 16:56:07 -04:00
Aysam Guerler
8420169b7e
ToolForm: Generate json for tools api, improve ui-tabs
2014-09-08 16:52:28 -04:00
Carl Eberhard
33dc9c283e
History panel: make search input shown by default, remove toggle; List panel: make collection-panel and history-panel inherit from list-panel, move list-panel and base-mvc.list-item to mvc/list; general history and collection panel refactoring
2014-09-08 16:49:30 -04:00
Carl Eberhard
1d32e43a37
Fix to 419ca68: re-add ability to re-size right and left panels using mouse events
2014-09-08 15:10:49 -04:00
Martin Cech
5934a68685
adding compressed version of jstree jquery plugin
2014-09-08 14:45:37 -04:00
Martin Cech
3bddbcf11f
initial implementation of UI, API and flow for importing from Galaxy user directories, introduces jstree browser into the project, includes refactoring of some library API methods into common managers
2014-09-08 14:27:49 -04:00
Aysam Guerler
25fd90792e
ToolForm: Add jobs module, fix minor issues and revise tool form style
2014-09-06 16:08:35 -04:00
Aysam Guerler
38d5ac8f90
ToolForm: Additional buttons, fixes and improvements, genome build selector, first commit for multiple dataset and collection selector
2014-09-05 11:24:55 -04:00
Aysam Guerler
aaa5a810ab
ToolForm: Fix multi-select field
2014-09-03 23:33:30 -04:00
Martin Cech