Nicola Soranzo
1d9d93ea50
Merge branch 'release_25.0' into dev
2025-08-07 15:54:38 +01:00
Nicola Soranzo
7f89e0eab9
Code cleanups from pyupgrade
...
Found by running:
```
make pyupgrade
ruff check --fix .
ruff check --preview --unsafe-fixes --select=F401 --fix .
make format
make update-client-api-schema
```
The bulk of the changes are replacements of typing deprecated aliases
such as `Dict` and `List` with the standard library classes. These
aliases became redundant in Python 3.9 when the corresponding
pre-existing classes were enhanced to support `[]`, see
https://docs.python.org/3/library/typing.html#deprecated-aliases
Also:
- Update the `pyupgrade` Makefile target to use `--py38-plus` for the
packages needed by Pulsar, including the new galaxy-tool-util-models
package.
2025-07-31 11:17:22 +01:00
John Chilton
a2af62966d
Fix parameter models for optional color params.
2025-07-30 11:37:12 -04:00
mvdbeek
b99112c337
Fix DataCollectionParameterModel factory
2025-05-06 14:23:23 +02:00
John Chilton
f37075c1a5
Fix various parameter validation issues.
...
I previously failed to include a bunch of validation checks I assumed had been covered so fixed that first and got a bunch of new issues detected. Also added a parameter specification test case for https://github.com/galaxyproject/galaxy/issues/19908 and fixed that.
2025-04-02 12:49:09 -04:00
davelopez
2bdcec0dda
Add test for gx_allow_uri_if_protocol with deferred collections
2024-11-03 12:47:15 +01:00
davelopez
605389f1f2
Expand documentation on allow_uri_if_protocol
2024-11-03 11:06:25 +01:00
davelopez
678caa415f
Add test for allow_uri_if_protocol with deferred input
2024-10-31 11:17:17 +01:00
John Chilton
730ea2ee03
Pydantic models for parameter validators.
2024-10-22 07:49:37 -04:00
John Chilton
951ab47f47
More tool tests.
2024-10-22 07:49:37 -04:00
John Chilton
ad73e9e838
Tool Request models.
2024-09-30 13:25:02 -04:00
John Chilton
b367c8a5a3
More tests for various data column feature combos.
2024-09-30 13:25:02 -04:00
John Chilton
b919f21c47
Parameter models for optional data columns.
2024-08-11 17:19:21 -04:00
John Chilton
67dc43f4e1
Parameter models for multiple=true data column data parameters.
2024-08-11 17:19:21 -04:00
John Chilton
c6ea4d3dff
More clarification of empty/multiple/optional select behaviors.
2024-08-11 17:19:21 -04:00
John Chilton
95da14738e
Parmaeter models for multiple=true group tags.
2024-08-11 17:19:21 -04:00
John Chilton
c18bfa3475
Tool parameter models for optional group tags.
2024-08-10 10:30:20 -04:00
John Chilton
ed720332b9
Parameter models for directory_uri parameters.
2024-08-09 11:54:19 -04:00
John Chilton
aa569ae71b
Parameter models for genomebuild parameters
2024-08-09 11:54:19 -04:00
John Chilton
53a1ee520f
Update parameter models for required integers.
2024-08-09 11:54:19 -04:00
John Chilton
e530227ac6
Implement group tag testing in tools.
2024-08-09 11:54:19 -04:00
John Chilton
27ecea0bfc
Address PR comment in gx_select.xml, improve comment.
2024-08-09 11:54:19 -04:00
John Chilton
e8e569f820
Work toward data column support in tool parameter meta models.
2024-08-05 18:37:24 -04:00
John Chilton
c92f6dd47c
Richer typing / models / parsing for drill down parameters.
2024-08-05 17:02:51 -04:00
John Chilton
57f9137861
Progress on repeat validation...
2024-08-05 09:44:43 -04:00
John Chilton
5bb6804045
Parameter specification reference testing - conditionals with selects.
2024-08-05 09:44:43 -04:00
John Chilton
b27d6331d4
Clarify current select behavior around null and empty selections.
2024-08-05 09:44:43 -04:00
John Chilton
e1fc41606f
Bug fix for invalid duplicate id in function test tools.
2024-08-04 20:57:12 -04:00
John Chilton
5359f8ba74
Input parameter schema.
2024-07-15 09:46:13 -04:00
Nicola Soranzo