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Author SHA1 Message Date
Uwe Winter 68b4a0c948 Add Config opion disable_local_accounts 2025-09-29 17:40:47 -05:00
Nicola Soranzo 2f570c46e6 Merge pull request #20963 from mvdbeek/nodejs-wheel 
Use nodejs-wheel to install node
 2025-09-30 00:07:25 +02:00
Björn Grüning 06ec81c62f Merge pull request #20971 from guerler/jupyterlite.001 
Fix JupyterLite History Identifier Retrieval Without Dataset
 2025-09-29 21:31:47 +02:00
Marius van den BeekandNicola Soranzo d52c0c2b19 Drop read node.js version step 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2025-09-29 17:11:28 +02:00
guerler 7cd2377d2c Update jupyterlite package version 2025-09-29 14:21:17 +03:00
John Chilton 10991781e4 Merge pull request #20960 from mvdbeek/landing_request_tracking_2 
Track landing request with invocation
 2025-09-28 22:35:06 -04:00
mvdbeek 38a7d23fbc Drop setup-node action where possible 
Where we still use the action we don't install python dependencies.
 2025-09-28 10:05:41 +02:00
Nicola Soranzo f749d36e19 Merge pull request #20968 from galaxybot/dev_auto_update_dependencies 
Update Python dependencies
 2025-09-27 08:39:16 +01:00
mvdbeek 9f919eb5e1 Track landing request with invocation 
Contains stub for tool request tracking, once that is merged we could
start using it.
 2025-09-27 09:19:33 +02:00
mvdbeek b488cf2694 Use nodejs-wheel to install node 2025-09-27 09:17:12 +02:00
galaxybot 9fd34d7843 Update Python dependencies 
by running `make update-dependencies`.
 2025-09-27 03:14:53 +00:00
Ahmed Hamid Awan 85166751f1 Merge pull request #20965 from ahmedhamidawan/fix_tours_schema_references 
Move tours schema to schema directory (to fix package structure)
 2025-09-26 17:42:51 -05:00
Ahmed Awan 426a1b5fd1 Move tours schema to schema directory (to fix package structure) 
Discovered in https://github.com/galaxyproject/galaxy/pull/20868#issuecomment-3338402529
 2025-09-26 12:14:27 -05:00
Marius van den Beek f0ad237301 Merge pull request #20957 from mvdbeek/landing_request_tracking 
Allow sending and tracking landing request origin
 2025-09-26 16:42:10 +02:00
mvdbeek 77f28029e5 Allow sending and tracking landing request origin 2025-09-26 16:07:24 +02:00
John Chilton 8c61eb68be Merge pull request #20912 from ahmedhamidawan/invocation_view_step_enhancements 
Improve Invocation View step display
 2025-09-26 09:36:51 -04:00
Marius van den Beek 288490493d Merge pull request #20865 from natefoo/modernize-maf-tools 
Update maf tools with profiles, required_files, and requirements.
 2025-09-26 14:18:44 +02:00
mvdbeek 657b9f7f6c Add separate out file for MAF_Limit_To_Species1 test 
The test file is shared with MAF_filter, so if you use the same file
only one of the tests can pass.
 2025-09-26 12:47:24 +02:00
Aysam Guerler 8ec885eda0 Merge pull request #20868 from ahmedhamidawan/move_tour_generator_webhook_to_core 
Replace tour_generator webhook with internal API and frontend
 2025-09-26 07:45:08 +03:00
Ahmed Hamid Awan 030d8dc9e9 Merge pull request #20945 from ahmedhamidawan/revert_form_tags 
Add a dedicated `ToolFormTags` component for tool form output tags
 2025-09-25 17:52:16 -05:00
Marius van den Beek 7d6bce7983 Merge pull request #20851 from ksuderman/20750-ijson-parser 
Use a streaming based parser (ijson) when setting metadata for biom1 files.
 2025-09-25 21:19:45 +02:00
Marius van den Beek 4fa5a3b71b Merge pull request #20946 from ahmedhamidawan/26.0_default_milestone 
Bump default milestone to 26.0
 2025-09-25 21:09:24 +02:00
Marius van den Beek 8855675d09 Merge pull request #20717 from selten/patch-14 
Improve cli and slurmcli runner traceability for job status and failure reasons
 2025-09-25 20:53:42 +02:00
Marius van den Beek 8a5d749ba2 Merge pull request #20951 from mvdbeek/tool_source_schema_enhancements 
Add resource docs and tweak tool source schema title generation
 2025-09-25 20:49:47 +02:00
Ahmed AwanandAysam Guerler 952b2a97db use consistent allowGeneratedTours prop; reuse ERROR_STATES 
Co-authored-by: Aysam Guerler <aysam.guerler@gmail.com>
 2025-09-25 11:31:05 -05:00
Nate Coraor 7a88000aff Update maf tools with profiles, required_files, and requirements. 2025-09-25 18:13:26 +02:00
mvdbeek 28f562b8e1 Add package requirements 2025-09-25 18:08:58 +02:00
mvdbeek 8850857ee9 Fix sacct call 2025-09-25 17:28:41 +02:00
Nicola Soranzo ba41eefe99 Add type annotations 2025-09-25 16:22:07 +01:00
Nicola Soranzo 47acb619bb Move `Optional[] inside Annotated[]` 
Otherwise title and description are missing from the generated
TypeScript schemas.
 2025-09-25 16:21:30 +01:00
setlen e1930a1be3 Try changing return value lint 2025-09-25 16:49:04 +02:00
setlen 0c5fc067ac FIx formatting 2025-09-25 16:49:04 +02:00
selten 08bf91c5c5 Also fix linting errors 2025-09-25 16:49:03 +02:00
selten 64a1f4e5b2 Add import for subprocess 2025-09-25 16:49:03 +02:00
selten c4b643ea3a Fix indentation 2025-09-25 16:49:03 +02:00
selten 8b18fc5a39 Improve cli and slurmcli runner traceability for job status and failure reasons 2025-09-25 16:49:01 +02:00
Marius van den Beek 3481880c41 Merge pull request #20899 from jmchilton/tool_request_types_1 
Small cleanup of tool execution code.
 2025-09-25 15:15:42 +02:00
mvdbeek 7a240dc91b Don't auto-capitalize tool source field titles 2025-09-25 14:55:50 +02:00
mvdbeek 614afd2fc8 Add more documentation to cores and ram 2025-09-25 11:15:23 +02:00
Ahmed Awan 88ccbb1e2b Bump default milestone to 26.0 2025-09-24 15:58:51 -05:00
Ahmed Awan 49bd6cac01 fix invocation job details selenium to open the newly added outputs tab first 
The job(s) and output(s) are in tabs now, so the selenium accounts for that.
 2025-09-24 15:47:48 -05:00
Ahmed Awan 1e71c03ba1 simplify invocation step outputs tab title to just "Outputs" 2025-09-24 15:00:55 -05:00
Ahmed Awan ea71deec95 add/adjust jests for job step jobs now shown in a table instead of tabs 2025-09-24 14:56:07 -05:00
Ahmed Awan f4c043fba6 give step card a min-height so we don't scroll up when changing steps 
Also adds a button group to navigate one step ahead/behind.
 2025-09-24 14:56:07 -05:00
Ahmed Awan 128a3e0066 only fetch invocations for job (to get ID) if ID is not provided as prop 
This prevents us fetching `/api/invocations?job_id` needlessly, when we already have the invocation ID in the parent components.
 2025-09-24 14:56:07 -05:00
Ahmed Awan 8a1cc8dee4 convert JobDetails to composition API and TS 2025-09-24 14:56:07 -05:00
Ahmed Awan d2777a645a convert JobInformation to TS 2025-09-24 14:56:07 -05:00
Ahmed Awan 138fe76684 handle a running invocation changing the list of jobs for a step reactively 2025-09-24 14:56:07 -05:00
Ahmed Awan 5a42a7e751 remove parent div on the date cell 2025-09-24 14:56:07 -05:00
Ahmed Awan 825b2f1dc7 replace the vertical tab step view with a table in invocation job step 2025-09-24 14:56:07 -05:00