Nicola Soranzo
0f1bfb6839
Type annotation improvements
2025-02-21 15:46:14 +00:00
mvdbeek
1d31d5b3cd
Merge branch 'release_24.1' into release_24.2
2025-02-05 10:15:07 +01:00
mvdbeek
bd42a470a5
Only add default check job if any output active
2025-02-04 11:40:37 +01:00
mvdbeek
65824fc70e
Fix extracting workflows from purged and deleted histories
2025-02-04 11:40:15 +01:00
mvdbeek
f550bb5715
Drop unused datasets controller methods
2024-07-19 11:53:34 +02:00
guerler
90adbc20c2
Remove legacy history ids export controller endpoint and template
2024-02-20 07:24:30 -05:00
guerler
89f23af9fc
Remove legacy history xml list template
2024-02-20 07:22:21 -05:00
guerler
079bd619e6
Remove Circster, Phyloviz and Sweepster
2024-02-01 19:46:17 -05:00
davelopez
66d4b67546
Remove web.framework dependency from tools
...
- Use `util.unicodify` in copy_view.mako for consistency with other usages of unicodify in the file.
- Move `to_unicode` to the only place it's used under tool/search/__init__.py
2023-11-30 16:42:04 +01:00
Nicola Soranzo
3af812ce6c
Fix testing of the galaxy-tool-shed package
...
It was not tested before because of the missing newline at the end of
`packages/packages_by_dep_dag.txt` and of how `read` works in bash.
Also:
- Allow empty lines in packages_by_dep_dag.txt and divide it into layers, so
that packages in each layer depend only on packages in the layers above.
- Fix type annotations and use of re-exported imports
2023-11-21 18:08:28 +00:00
John Chilton
5b3c34dfda
Remove admin mako helper that is unused.
2023-09-26 13:46:58 -04:00
Yakubov, Sergey
8aa5621102
implement display function for all datatypes
...
display the first 100K of a binary file or a file whose type is unknown to Galaxy
as ASCII text instead of downloading this file.
2023-06-21 08:26:36 -04:00
John Chilton
c96e2cd964
Accessibility tests and fixes for copy_view.mako
2023-06-02 10:08:17 -04:00
guerler
c1ae0c420f
Remove unused styles, adjust reports app
2023-04-20 17:30:18 +03:00
mvdbeek
756d047e1c
Merge branch 'release_23.0' into dev
2023-03-06 18:08:05 +01:00
mvdbeek
d97adf6359
Fix slugified dataset display
...
Fixes https://github.com/galaxyproject/galaxy/issues/15676 .
2023-03-03 18:39:34 +01:00
Dannon Baker
3aac36d588
Drop myexperiment.org exports
2023-02-14 10:45:52 -05:00
Dannon Baker
85f8938034
Update workflow extract mako
2023-02-13 11:43:09 -05:00
Dannon Baker
f80ec87a49
viz_base and reports app base styles, leaving toolshed alone for now pending the rewrite
2023-02-13 11:43:09 -05:00
Dannon Baker
09f553bbb1
Fix phyloviz template rendering -- this got messed up in some hierarchy changes and had an undefined title causing the 500
2023-02-06 13:41:48 -05:00
Martin Cech
063405a1cd
replace the png favicon with svg version
...
goes down from 16kb to 9kb and preserves all details
add padding to masthead logo
it now has no padding in the image itself
Add margin to svg
drop padding
since we decided to include it in logos
Slightly increase margin further
2022-12-20 15:44:07 -08:00
guerler
bd9e30392a
Remove redirect mako
2022-10-20 10:08:10 -04:00
guerler
39728dcf50
Also remove unused legacy permissions mako
2022-10-20 02:59:18 -04:00
guerler
91f2deb0e9
Remove legacy manage dependency mako
2022-10-20 02:41:31 -04:00
guerler
c1862847ec
Remove unused makos
2022-10-16 00:16:47 -04:00
guerler
727d5bb99b
Toolshed legacy test compliance
2022-10-16 00:16:47 -04:00
guerler
aee24ab550
Remove unused dataset makos
2022-10-16 00:16:47 -04:00
guerler
6d3b66831c
Dismantle visualization display makos
2022-10-16 00:16:47 -04:00
guerler
21973d71ac
Remove display mako, and prep stub
2022-10-16 00:16:45 -04:00
guerler
7fbee54db1
Remove legacy html content handler controllers and makos
2022-10-16 00:15:39 -04:00
guerler
e620fb50d3
Remove html legacy page editor, intend to add managers to translate to markdown
2022-10-16 00:15:39 -04:00
guerler
d838f480b0
Remove legacy makos, move parts to client
2022-10-16 00:15:38 -04:00
guerler
b229a0abfb
Reroute page display to client
2022-10-16 00:15:38 -04:00
guerler
cfbb5f630e
Remove page editor mako and controller endpoint
2022-10-16 00:15:38 -04:00
guerler
9d43a0c129
Remove legacy manage dependency mako view and controller
2022-10-16 00:15:38 -04:00
guerler
168d4e0098
Remove masthead mako, remove custom galaxy base panels mako
2022-10-16 00:15:38 -04:00
guerler
d0aa13fb84
Decouple trackster form invoking masthead component
2022-10-16 00:15:38 -04:00
guerler
ae9a25b45e
Remove sharing/export makos for workflow
2022-09-27 15:56:11 -04:00
guerler
4b6888b70a
Replace legacy history with link to view in legacy html pages
2022-09-21 19:54:06 -04:00
guerler
6c4d248d82
Adjust endpoint, prevent from crashing for large histories
2022-09-21 14:01:41 -04:00
guerler
461cd6d0b0
Remove legacy bundle helpers from display mako
2022-09-21 14:01:41 -04:00
guerler
cd5058da7d
Prep mounting of history view in makos
2022-09-21 14:01:41 -04:00
John Chilton
b84076fa4a
Merge pull request #14609 from guerler/bundle_toolshed_js
...
Place Toolshed JS modules into separate bundle
2022-09-16 09:21:58 -04:00
guerler
f832775328
Use toolshed bundle store in repository mako
2022-09-13 11:50:43 -04:00
Dannon Baker
3849850739
Drop old history multi-panel
2022-09-13 11:19:40 -04:00
Dannon Baker
d7b096803d
Avoid creating panelConfig, just use galaxyConfig
2022-09-09 13:44:47 -04:00
Dannon Baker
1fa25b7d6b
Drop empty inits from templates.
2022-09-09 13:44:47 -04:00
guerler
d2ff532b5c
Use consistent names, apply prefix in consumer
2022-09-01 12:40:42 -04:00
Dannon
bfeb8b4737
Merge pull request #14481 from dannon/a11y
...
Primary analysis interface a11y fixes
2022-09-01 09:09:57 -04:00
guerler
b9640645ba
Remove trackster related legacy panel handling
2022-08-26 15:40:13 -04:00
Nicola Soranzo