opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-11-03 04:43:11 +08:00
Code Issues Packages Projects Releases Wiki Activity
85,639 Commits 63 Branches 246 Tags
68b4a0c948d94de4d1002e0f16efceec8501998b
Commit Graph
98 Commits
Author SHA1 Message Date
John Chilton 5d31aedcc4 Likely fix for transiently failing published histories test. 
The failing error:

```
self = <galaxy_test.selenium.test_histories_published.TestPublishedHistories object at 0x7f4ae3449e80>

    @selenium_test
    def test_published_histories_username_filter(self):
        self._login()
        self.navigate_to_published_histories()
        username = self.user2_email.split("@")[0]
        self.components.published_histories.search_input.wait_for_and_send_keys(f"user:{username}")
>       self.assert_histories_present([self.history2_name])
```
 2025-09-10 09:49:34 -04:00
Nicola Soranzo 7f89e0eab9 Code cleanups from pyupgrade 
Found by running:

```
make pyupgrade
ruff check --fix .
ruff check --preview --unsafe-fixes --select=F401 --fix .
make format
make update-client-api-schema
```

The bulk of the changes are replacements of typing deprecated aliases
such as `Dict` and `List` with the standard library classes. These
aliases became redundant in Python 3.9 when the corresponding
pre-existing classes were enhanced to support `[]`, see
https://docs.python.org/3/library/typing.html#deprecated-aliases

Also:
- Update the `pyupgrade` Makefile target to use `--py38-plus` for the
  packages needed by Pulsar, including the new galaxy-tool-util-models
  package.
 2025-07-31 11:17:22 +01:00
Nicola Soranzo 9bd2a328f1 Type annotation fixes for mypy 1.16.0 2025-06-10 02:22:18 +01:00
mvdbeek db51322b18 Inject hid only when needed (in selenium) 2025-04-22 14:18:51 +02:00
mvdbeek eb1709fcbb Merge branch 'release_24.2' into dev 2025-03-08 11:20:03 +01:00
davelopez 28feab5313 Adapt selenium tests for workflow editor 
Do not expect the save button to disappear when the workflow is saved
 2025-03-07 17:06:14 +01:00
Laila Los 21ceb30ebc wait for save to complete 2024-12-03 10:25:16 -05:00
Dannon ff7025d4c0 Merge pull request #18729 from ElectronicBlueberry/workflow-editor-activity-bar 
Workflow Editor Activity Bar
 2024-11-26 09:28:29 -05:00
Laila Los 4f7dd00599 wait for save to complete 2024-11-25 11:08:45 +01:00
Nicola Soranzo 26a4e146e0 Fix UP031 errors 
reported by ruff 0.8.0 .
 2024-11-24 21:35:23 +00:00
John Chilton 660f78fe37 Implement workflow landings. 
Includes a lot of plumbing for tools but not the APIs - they are not ready to go yet.
 2024-09-30 13:25:02 -04:00
Nicola Soranzo 8cdca0f343 Revert some requests import changes 
introduced in https://github.com/galaxyproject/galaxy/pull/18003 .
In particular, when using requests in the tests to connect to Galaxy
or the ToolShed it's not needed to use the modified headers.

Also:
- Move some imports after conditional imports.
- Fix type annotations in `lib/tool_shed/test/base/populators.py`
- Fix typo bug in `test/unit/util/test_get_url.py`
 2024-05-23 15:55:56 +01:00
mvdbeek e8a3b8c0cd Create wrapper for requests with default user agent 2024-04-16 17:54:29 +02:00
Nicola Soranzo 053ca5198e Enable `warn_unused_ignores` mypy option 2024-04-16 01:12:58 +01:00
John Davis 28fd6ad99b Fix package mypy errors 2024-04-02 10:08:53 -04:00
Nicola Soranzo 4588a27c0f Code cleanups from pyupgrade 
Found by running:

```
make pyupgrade
```
 2024-03-10 03:32:47 +00:00
Alireza Heidari 362fe07467 fix some workflow selenium tests 2024-02-16 12:02:49 +01:00
Alireza Heidari dca644aedc fix some workflow tests 2024-02-16 12:02:47 +01:00
Nicola Soranzo e975ca3754 Update to black 2024 stable style 2024-01-30 18:09:51 +00:00
Michael R. Crusoe df807e6d17 Use the walrus := operator! 
Fixed by running:

```
ack --type=python -f | grep -v '^lib/galaxy/schema/bco/\|^lib/galaxy/schema/drs/\|^tools/\|^.venv/\|^.tox/' | grep -v '^lib/galaxy/files/sources/\|^lib/galaxy/job_metrics/\|^lib/galaxy/objectstore/\|^lib/galaxy/tool_util/\|^lib/galaxy/util/' | xargs auto-walrus
make format
```

Note that the directories for the packages listed in
`packages/packages_for_pulsar_by_dep_dag.txt`
were explictly excluded.
 2023-11-26 18:34:10 +00:00
John Chilton e592070420 Test decorator improvements. 
- Add some basic typing to them.
- Include more information in assertion errors thrown when they target an incorrectly configured server.
- Allow for explicit anonymous interactor creation so we can cleanly apply these decorators to Selenium tests (Selenium test interactors use API keys that can be created from the UI - so they don't have complete user information available upfront).
- Add decorator skip_without_visualization_plugin.
- Add some decorators to the visualization tests and implement a second test.
- Use managed_history decorator to ensure existing test has an hid of 1 as assumed.
 2023-06-18 12:34:21 -04:00
Björn Grüning 6ff2397a91 Merge pull request #16122 from jmchilton/axe-selenium 
Integrate accessibility testing into Selenium testing
 2023-05-26 22:53:31 +02:00
John Chilton de6fc52721 When writing test error debug directories, create a latest symlink to ease navigation. 2023-05-24 15:46:09 -04:00
John Chilton f9e00f597a axe testing 2023-05-24 12:54:25 -04:00
Assunta DeSanto 66289a4cf4 adding error for assertion in assert_item_peek_includes 2023-05-03 14:23:28 -04:00
Dannon Baker 575afab8fa Update selenium hid text assertion 2023-03-03 07:58:44 -05:00
John Chilton 5fb47ac23f WIP: selenium test decorators... 2022-11-26 11:31:13 -05:00
John Chilton aeac8c6060 Restore test framework features... 2022-11-26 11:28:36 -05:00
mvdbeek 304b12c143 Move things around 2022-11-16 17:01:28 +01:00
Nicola Soranzo 10802d35a9 Mark non-slow unit tests with more relevant `@skip_if_github_down` decorator 2022-11-03 18:47:31 +00:00
Nicola Soranzo 5ca0aea54a Drop nose 
It's deprecated and unmaintained, and is broken under Python 3.10 .
 2022-11-01 18:45:07 +00:00
Dannon 0298ee36f3 Merge pull request #14679 from nsoranzo/replace_unittest.TestCase 
Replace ``unittest.TestCase`` with pytest-based partial re-implementation
 2022-09-27 09:10:59 -04:00
Nicola Soranzo c35d8f2a06 Replace `unittest.TestCase` with pytest-based partial re-implementation 
Also:
- Rename `FooBarTestCase` test classes as `TestFooBar`. These were collected
  by pytest only because they were `unittest.TestCase` derived, but normally
  pytest collects only test classes whose name starts with `Test`, see
  https://docs.pytest.org/en/7.1.x/reference/reference.html#confval-python_classes
 2022-09-27 03:34:58 +01:00
guerler d676345678 Clear out beta navigation selectors 2022-09-22 22:21:31 -04:00
guerler 399c6e9194 Remove is_beta_history flag from selenium tests 2022-09-22 20:20:52 -04:00
John Chilton 65c4edac6a Rename has_yaml to yaml_content per PR review request. 2022-09-20 11:24:48 -04:00
Nicola Soranzo 36178dcd71 Drop GitHub workflow for legacy history Selenium tests 
and `GALAXY_TEST_SELENIUM_BETA_HISTORY` environment variable.

Any way I think we were not testing the legacy history any more since
https://github.com/galaxyproject/galaxy/pull/11748 was merged, see
https://github.com/galaxyproject/galaxy/pull/11748#discussion_r850401243 .
 2022-09-04 13:29:33 +01:00
Nicola Soranzo 23afbb64e2 Updates for stuff removed in Selenium 4.3.0 2022-07-13 10:06:33 -04:00
mvdbeek c14d6164e9 Enable celery in API, Selenium, Integration tests 2022-05-25 19:46:47 +02:00
John Chilton 4e92f96d68 Selenium workflow management tests - improved assertion. 2022-05-09 18:41:21 -04:00
John Chilton f8e34572f8 Improvements to workflow and invocation grid testing. 2022-04-28 10:32:46 -04:00
Dannon 6c58ecacbc Merge pull request #13802 from guerler/history_hidden_deleted 
Adjustments to hidden/deleted history links
 2022-04-26 05:51:42 -07:00
Marius van den Beek 2b3486bb25 Merge pull request #13793 from mvdbeek/fetch_data_almost_everywhere 
Port api/tools/fetch to FastAPI, add schema, and use `__FETCH_DATA__` in most tests
 2022-04-26 13:36:51 +02:00
guerler 336bbd257d Remove new size, empty not shown anymore 2022-04-25 14:19:09 -04:00
John Chilton 1042519c4f Initial UI testing for workflow sharing. 2022-04-25 13:30:21 -04:00
mvdbeek 9abbac0180 Switch most tests to use `__DATA_FETCH__ instead of upload1` 2022-04-23 12:05:54 +02:00
John Chilton 2bf9366730 Workflow test cases for run target. 2022-03-31 17:22:46 -04:00
John Chilton ff1d7760a5 Reduce duplication around waiting for workflow results in test_workflow_run. 2022-03-31 17:22:46 -04:00
John Chilton f49d0da143 Workflow testing improvements. 
- More typing.
- Use mixin to allow greater reuse of a couple things around running workflows and setting up test data.
 2022-03-31 17:22:46 -04:00
John Chilton 4dae7c6f21 Disable implicit re-imports across the projects. 
Exclude galaxy.util for now, but the exclusion is tracked in setup.cfg. Elimiantes a bunch of flake exception markers.
 2022-03-15 19:58:42 -04:00