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Commit Graph
1909 Commits
Author SHA1 Message Date
Ahmed Awan b2a31148c6 Add /api/tours/generate that replaces the entire tour_generator webhook 
- Tool Generated Tours have an internal GET FastAPI route.
- That API uses a new `TourManager`.
- The `tour_generator` webhook has been removed entirely.
 2025-09-23 08:41:27 -05:00
Pavankumar Videm febe9ef420 update core.history tour 
- replaced elements with component selectors
 2025-06-27 22:15:27 +02:00
guerler 22a84dcc04 Remove broken hyphyvision, needs to be fixed in galaxy-visualizations repository 2025-06-12 14:36:53 -04:00
guerler c85bb1c200 Move script template to default template path, remove option to add extra templates 2025-06-12 14:36:52 -04:00
guerler fa7d157d45 Move mvpapp to yml 2025-05-29 17:55:38 -04:00
guerler 32a8fce70c Move xml of mvpapp to static 2025-05-29 08:41:14 -04:00
guerler f1221a0abe Move xmls of mako viz trackster, hyphyvision, hivtrace to static 2025-05-29 08:39:54 -04:00
guerler 40bbe9188a Add annotate image to yml 2025-05-29 08:35:22 -04:00
guerler 235a892a3a Move aequatus to yml 2025-05-29 08:26:15 -04:00
guerler 35a451a242 Add tiffviewer to yml 2025-05-29 08:19:47 -04:00
guerler bf754ca9a7 Add fitsgraph to yml 2025-05-29 00:18:06 -04:00
guerler 0f2c021bb1 Remove legacy readme and dtd file 2025-05-28 23:24:58 -04:00
guerler 795538395c Add plotly to yml 2025-05-28 23:09:29 -04:00
guerler 504f54ca45 Move openlayers and openseadragon to yml 2025-05-28 22:39:00 -04:00
guerler 4452c09b72 Move cytoscape to yml 2025-05-28 20:24:07 -04:00
guerler 163dd4c9d6 Move phylocanvas to yml 2025-05-28 20:15:07 -04:00
guerler 9e34309ea9 Move heatmap, ts_visjs, unipept and venn to yml 2025-05-28 20:06:17 -04:00
guerler 0bf3b9978b Move molstar, ngl, vtk, vizarr, vitessce and pca to yml 2025-05-28 19:32:03 -04:00
guerler dd5041a718 Move plyr to yml 2025-05-28 18:50:15 -04:00
guerler 233beef674 Remove remaining artifacts 2025-05-28 18:46:52 -04:00
guerler c1280cb421 Expliclty use entry point mako in hivtrace viz 2025-05-28 18:40:58 -04:00
guerler eef0545de5 Switch default visualization type to new frameworks script entry point 2025-05-28 18:40:58 -04:00
guerler 3c73c7d3db Move example file to static 2025-05-26 10:00:44 -04:00
guerler 74a1f823ec Remove graphviz 2025-05-26 09:30:01 -04:00
guerler 52e570447c Remove msa 2025-05-26 09:29:57 -04:00
guerler e4146fbbf9 Remove csg 2025-05-26 09:29:12 -04:00
guerler fe83279186 Remove nora 2025-05-26 09:29:12 -04:00
guerler 58827fe1b3 Remove legacy protein viewer 2025-05-26 09:29:12 -04:00
guerler b6528a8aa6 Remove nvd3 2025-05-26 09:29:12 -04:00
guerler 556fe35e68 Remove jqplot 2025-05-26 09:29:12 -04:00
guerler fb7edc6093 Remove legacy scatterplot 2025-05-26 09:29:12 -04:00
guerler c1e50e6ac4 Add kepler to yml 2025-05-25 14:15:12 -04:00
guerler d9f26b7be6 Add jupyterlite to yml 2025-05-25 14:01:02 -04:00
guerler 374dcbc210 Add h5web to yml 2025-05-25 13:11:44 -04:00
guerler e045fc8c00 Add niivue to yml 2025-05-25 12:59:25 -04:00
guerler 0e54d41677 Add drawrna to yml 2025-05-25 12:51:09 -04:00
guerler 788e3a0709 Add chiraviz to yml 2025-05-25 12:44:00 -04:00
guerler c967eb5040 Add alignment to yml 2025-05-25 06:30:26 -04:00
guerler e20c470938 Install aladin from yml 2025-05-25 06:23:31 -04:00
guerler 8a830b7584 Update tabulator version 2025-05-24 19:07:32 -04:00
guerler 24ec1e614c Add handling for updated plugin build mechanism 2025-05-24 18:23:36 -04:00
guerler 8daf59e96e Remove aceeditor from core 2025-05-24 15:13:50 -04:00
mvdbeek d92d99ed28 Merge branch 'release_25.0' into dev 2025-05-19 17:01:15 +02:00
Marius van den Beek 40cd863d7e Merge pull request #19892 from guerler/remove_backbone_charts 
Remove backbone-based charts modules
 2025-05-19 08:17:15 +02:00
guerler 9ddaff343f Update tabulator version, improve handling of very large files 
Use Math.ceil when determining page count
 2025-05-17 13:04:23 -04:00
Michael R. Crusoe 6d85dc5454 pv viz package: Change license to "MIT" as all contributors have agreed. 
$ git log -- config/plugins/visualizations/pv/ | grep Author | sort -u
Author: Aysam Guerler <aysam.guerler@gmail.com>
Author: Dannon Baker <dannon.baker@gmail.com>
Author: Mahendra Paipuri <mahendra.paipuri@gmail.com>

https://github.com/galaxyproject/galaxy/pull/13923 (Aysam Guerler <aysam.guerler@gmail.com>)
https://github.com/galaxyproject/galaxy/pull/14540 (Dannon Baker <dannon.baker@gmail.com>)
https://github.com/galaxyproject/galaxy/pull/16119 (Mahendra Paipuri <mahendra.paipuri@gmail.com>)
 2025-05-16 17:53:52 +02:00
Michael R. Crusoe a1235cca41 nvd3_bar viz package: Change license to "MIT" as all contributors have agreed. 
$ git log -- config/plugins/visualizations/nvd3/nvd3_bar/ | grep Author | sort -u
Author: Aysam Guerler <aysam.guerler@gmail.com>
Author: Dannon Baker <dannon.baker@gmail.com>

https://github.com/galaxyproject/galaxy/pull/13923 (Aysam Guerler <aysam.guerler@gmail.com>)
https://github.com/galaxyproject/galaxy/pull/14540 (Dannon Baker <dannon.baker@gmail.com>)
 2025-05-16 17:53:41 +02:00
Michael R. Crusoe 106bc1398c msa viz package: Change license to "MIT" as all contributors have agreed. 
$ git log -- config/plugins/visualizations/msa/ | grep Author | sort -u
Author: Aysam Guerler <aysam.guerler@gmail.com>
Author: Dannon Baker <dannon.baker@gmail.com>
Author: Mahendra Paipuri <mahendra.paipuri@gmail.com>

https://github.com/galaxyproject/galaxy/pull/13923 (Aysam Guerler <aysam.guerler@gmail.com>)
https://github.com/galaxyproject/galaxy/pull/14540 (Dannon Baker <dannon.baker@gmail.com>)
https://github.com/galaxyproject/galaxy/pull/16119 (Mahendra Paipuri <mahendra.paipuri@gmail.com>)
 2025-05-16 17:47:24 +02:00
Michael R. Crusoe 3d81ca5a6f jqplot_bar viz package: Change license to "MIT" as all contributors have agreed. 
$ git log -- config/plugins/visualizations/jqplot/jqplot_bar/ | grep Author | sort -u
Author: Assunta DeSanto <assuntad23@gmail.com>
Author: Aysam Guerler <aysam.guerler@gmail.com>
Author: Dannon Baker <dannon.baker@gmail.com>

https://github.com/galaxyproject/galaxy/pull/11799 (Assunta DeSanto <assuntad23@gmail.com>)
https://github.com/galaxyproject/galaxy/pull/13923 (Aysam Guerler <aysam.guerler@gmail.com>)
https://github.com/galaxyproject/galaxy/pull/14540 (Dannon Baker <dannon.baker@gmail.com>)
 2025-05-16 17:47:16 +02:00
Michael R. Crusoe 395b191484 fits_graph_viewer viz package: Change license to "MIT" as all contributors have agreed. 
$ git log config/plugins/visualizations/fits_graph_viewer/ | grep Author | sort -u
Author: Amirhossein Naghsh Nilchi <amirnnilchi@gmail.com>
Author: Aysam Guerler <aysam.guerler@gmail.com>
Author: Dannon Baker <dannon.baker@gmail.com>
Author: francoismg <francois.moriergenoud@gmail.com>

https://github.com/galaxyproject/galaxy/pull/20183 (Amirhossein Naghsh Nilchi <amirnnilchi@gmail.com>)
https://github.com/galaxyproject/galaxy/pull/13923 (Aysam Guerler <aysam.guerler@gmail.com>)
https://github.com/galaxyproject/galaxy/pull/14540 (Dannon Baker <dannon.baker@gmail.com>)
https://github.com/galaxyproject/galaxy/pull/19003 (francoismg <francois.moriergenoud@gmail.com>)
 2025-05-16 17:47:07 +02:00