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Author SHA1 Message Date
carlfeberhard 670484cebc UI, history: fix current history panel loading indicator 2016-03-18 12:28:20 -04:00
carlfeberhard fc5debdd3b UI, history: fix first search loading indicator on history-view 2016-03-18 11:50:48 -04:00
carlfeberhard 3102c4ca68 UI, history: move order into ControlledFetchCollection 2016-03-18 11:22:40 -04:00
carlfeberhard 563096e302 UI, history: add missing history-preferences file, separate out controlled fetch collection 2016-03-17 16:20:22 -04:00
carlfeberhard 5ed4f74c8d UI, history: rework fetch options building, have history-contents maintain includeHidden/Deleted 2016-03-17 13:36:47 -04:00
carlfeberhard 1465a02790 UI, history: fix history-contents comparator 2016-03-17 11:10:06 -04:00
carlfeberhard 40a597dfda UI, history: first pass at paginating history-contents 2016-03-17 09:49:08 -04:00
carlfeberhard 9102096f4e UI, history: simplify set up of sessionStorage/HistoryPrefs 2016-03-16 18:31:36 -04:00
carlfeberhard c030af5643 UI, history: move to History.fetch for most ajax loading 2016-03-16 18:15:21 -04:00
carlfeberhard 0e4118cda6 UI, history: clean up history model 2016-03-16 17:54:06 -04:00
carlfeberhard f395793704 UI, history: clean up history contents 2016-03-16 17:45:00 -04:00
carlfeberhard 8d1cd494ce UI, history: extract history preferences to it's own module 2016-03-16 17:34:32 -04:00
carlfeberhard 0a0edd9788 History: have controller 'current history' faux-api methods return the 'current' view from the serializer 2016-03-16 16:20:33 -04:00
carlfeberhard c6d2c8bf50 Managers: implement a new view for history serialization to bypass state_counts, state, or state_ids; add create_time and update_time to both summaries of hdas and hdcas; serialize contents for histories using a contents serializer (avoiding hda and hdca serialization and just serializing the results of the union) 2016-03-16 16:18:53 -04:00
carlfeberhard 0b8c984b76 Include database/jobs_directory in gitignore 2016-03-16 10:33:00 -04:00
Dannon Baker 9a0f971596 Merge branch 'release_16.01' into dev 2016-03-15 16:24:17 -04:00
Dannon Baker 9a343efe8b Merge pull request #1930 from mvdbeek/more_bytestring_for_pysam 
[16.01] Ensure chrom, start, end as bytestring in BamDataProvider
 2016-03-15 16:16:22 -04:00
Marius van den Beek 18473a187e Ensure chrom, start, end as bytestring in BamDataProvider 2016-03-15 19:41:09 +01:00
Nicola Soranzo 65a5b08c71 Merge pull request #1916 from erasche/fix-1723-back 
[16.01] Handle sections in view workflow
 2016-03-15 11:07:09 +00:00
Eric Rasche 23c3300900 Merge pull request #1911 from miloaec/dev 
adding contrib init for reports and modifying status check to have ou…
 2016-03-14 10:33:48 -05:00
John Chilton ff0bcd3920 Merge pull request #1901 from guerler/fix_basic_000 
Use shared value serialization for tool model
 2016-03-14 10:48:39 -04:00
Eric Rasche 90fcd8c668 Handle sections in view workflow 
Fixes 1723
 2016-03-14 14:47:21 +00:00
guerler 79a0972675 Improve empty dataset check, handle from_json inconsistency 2016-03-12 12:35:25 -05:00
Martin Cech 5d633ab599 Merge pull request #1914 from remimarenco/run_restart_modification 
Modify run.sh to add --restart option, for a more consistent use of pa…
 2016-03-12 09:24:22 -05:00
Martin Cech 957a8ff885 Merge pull request #1910 from mvdbeek/fix_not_an_error_1 
do not assume toolshed to be on URL root
 2016-03-11 18:44:00 -05:00
Remi Marenco e61e596d88 Modify run.sh to add --restart option, for a more consisten use of parameters 2016-03-11 15:40:09 -05:00
Mikael Loaec 1aaf65e8b6 missing ;; in case stop 2016-03-11 20:43:24 +01:00
Mikael Loaec d9c00771d0 adding blank line to separate function 2016-03-11 18:24:43 +01:00
Mikael Loaec 6d6b637299 removing lock files creation and deletion because of rigths problems in case of using galaxy user 2016-03-11 18:20:17 +01:00
Mikael Loaec 0697364f9d adding contrib init for reports and modifying status check to have output by process in case multiprocess 2016-03-11 17:21:22 +01:00
Marius van den Beek 3476c7f928 Split the path on 'repos', so that toolsheds that are on a subdirectory do not show errors when loading tools if there is actually no error. 2016-03-11 16:42:10 +01:00
Nicola Soranzo 5a50a4691c Merge pull request #1909 from mvdbeek/backport_repository_for_dependency_relationship 
[16.01] Backport  PR #1868
 2016-03-11 14:49:06 +00:00
Dannon Baker 8423fe74df Merge branch 'release_16.01' into dev 2016-03-11 09:45:30 -05:00
Marius van den Beek d6e38c7d48 remove unused import 2016-03-11 13:10:08 +01:00
Marius van den Beek b3e9398c3a Replace get_tool_shed_repository_by_tool_shed_name_owner_changeset_revision with get_repository_for_dependency_relationship 2016-03-11 13:10:02 +01:00
Martin Cech dd07156e11 Merge pull request #1900 from dannon/sentry_tool_errors 
Very basic tool error sentry reporting.
 2016-03-10 20:35:38 -05:00
Martin Cech 3abd2c213a Merge pull request #1898 from dannon/quota_api_fix_fabien 
[16.01] Quota API issue with serialization to JSON of Decimal
 2016-03-10 20:23:00 -05:00
Martin Cech afb4e9c8f4 Merge pull request #1897 from dannon/pysam_compat 
[16.01] Slight tweaks to our tabix usage.
 2016-03-10 20:19:18 -05:00
guerler 3c402a3723 Remove __collection_reduce__ 2016-03-10 19:25:05 -05:00
Dannon Baker f46f1d5808 Add tool version to title for grouping, and include path to tool config file. 2016-03-10 15:46:41 -05:00
guerler b1a9823a3c Remove RuntimeValue arrays 2016-03-10 14:17:18 -05:00
guerler 773095d403 Unify json representation for regular datasets and collections 2016-03-10 11:58:58 -05:00
Dannon Baker effdc314da Merge branch 'history.updating' into dev 2016-03-10 09:38:24 -05:00
John Chilton 6b96f7d5ab Merge pull request #1896 from dannon/svgwrite_svgfig_deps 
svgfig->svgwrite in unpinned requirements
 2016-03-10 09:37:32 -05:00
Dannon Baker 4fd5df6d58 Rebuild client, bundles had unresolved conflicts committed previously. 2016-03-10 09:27:21 -05:00
guerler 40c9e1af25 Use value_to_basic and to_json when populating the tool model 2016-03-10 02:54:43 -05:00
Dannon Baker 824c22942e Very basic tool error sentry reporting. 2016-03-09 15:17:03 -05:00
Dannon Baker a351c75687 Extra documentation for @mvdbeek 2016-03-09 11:31:18 -05:00
Dannon Baker f0b7a34dd3 Apply patch from Fabien Mareuil to resolve json serialization of Decimal error; for more see http://dev.list.galaxyproject.org/quota-api-error-td4669081.html 2016-03-09 11:07:12 -05:00
Dannon Baker c6f3e9b5b2 Slight cleanup, remove outdated comment regarding tabixfile.close() 2016-03-09 10:52:31 -05:00