 Dave Bouvier
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6085b5f36e
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Pull in changes from stable branch.
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2013-04-02 13:34:53 -04:00 |
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Dave Bouvier
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28487f8366
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Enable scrolling for the left panel in the tool shed. Fix for determining if a repository dependency can be added to a container.
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2013-04-02 13:34:25 -04:00 |
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Dave Bouvier
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9769304769
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Fix for adding new entries to a tool data table that is already present in app.tool_data_tables.
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2013-04-02 11:47:38 -04:00 |
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Carl Eberhard
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fa89edf316
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fix simple-galaxy.js util in browser test section
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2013-04-02 10:50:56 -04:00 |
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Dave Clements
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2935ca8e42
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New RST files describing Sphinx doc for tool shed changes.
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2013-04-01 14:49:17 -07:00 |
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Nate Coraor
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f04ac3a73f
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merge.
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2013-04-01 14:32:24 -04:00 |
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James Taylor
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9fbdb560cf
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biostar: bugfix for display name of anonymous users
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2013-04-01 14:01:56 -04:00 |
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Nate Coraor
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9633d87c78
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Merge changes from stable branch.
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2013-04-01 13:17:24 -04:00 |
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Nate Coraor
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3008447c20
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Added tag release_2013.04.01 for changeset 75f09617abaa
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2013-04-01 13:16:32 -04:00 |
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Nate Coraor
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f4d7bd7419
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Merge next-stable to stable for release.
v13.04
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2013-04-01 13:16:02 -04:00 |
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Nate Coraor
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599e009f47
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Close the next-stable branch.
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2013-04-01 12:35:49 -04:00 |
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Carl Eberhard
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1d56e06e3f
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api: history_contents.show, datasets.show add both types of display app links for consistency
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2013-04-01 12:28:44 -04:00 |
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Carl Eberhard
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422281a252
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pack scripts
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2013-04-01 11:20:18 -04:00 |
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Carl Eberhard
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7549fea5d2
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history panel: load display applications via ajax, update on force_history_refresh instead of reloading frame
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2013-04-01 11:10:08 -04:00 |
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Greg Von Kuster
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8b4b76e3ac
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Merged next-stable
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2013-03-29 13:03:58 -04:00 |
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Greg Von Kuster
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cfcb8a9cb0
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Fix missing import in tool shed's hg middleware controller.
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2013-03-29 13:02:18 -04:00 |
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Greg Von Kuster
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73b83b1de1
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Minor fixes to the questionable install_repository_revisions method in Galaxy's tool_shed_repositories API controller.
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2013-03-29 11:22:10 -04:00 |
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Greg Von Kuster
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10878a7f54
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Merged next-stable
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2013-03-29 09:46:52 -04:00 |
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Greg Von Kuster
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c4989eff48
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Be less restrictive when loacting tool image help files for tools contained in repositories.
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2013-03-29 09:46:19 -04:00 |
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Dave Bouvier
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592801097d
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Merged in next-stable.
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2013-03-29 09:31:59 -04:00 |
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Dave Bouvier
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eb89ce8365
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Fix for server error when logging out of the tool shed.
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2013-03-29 09:30:36 -04:00 |
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Dave Bouvier
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92aba536ab
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Merged in next-stable.
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2013-03-29 08:58:14 -04:00 |
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Jeremy Goecks
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d9a6548384
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More import cleanup.
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2013-03-28 18:58:30 -04:00 |
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Jeremy Goecks
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8e86b7ae61
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Automated merge.
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2013-03-28 18:45:12 -04:00 |
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Jeremy Goecks
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1b43c9895e
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Fix import *s in genome data providers.
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2013-03-28 18:44:41 -04:00 |
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Dannon Baker
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25df1b355c
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Add default controller for browse_library --> now 'library'.
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2013-03-28 18:44:10 -04:00 |
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Greg Von Kuster
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586e56c016
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merging from next-stable
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2013-03-28 16:32:59 -04:00 |
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Greg Von Kuster
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011e72a45b
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Fix for displaying tool shep images in for tools contained in repositories either in the tool shed or in Galaxy.
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2013-03-28 16:32:32 -04:00 |
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Carl Eberhard
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02190d67cc
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merge stable
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2013-03-28 16:24:16 -04:00 |
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Carl Eberhard
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81b5ff4e86
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history: remove job subquery
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2013-03-28 16:23:51 -04:00 |
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James Taylor
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fb6a186b33
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biostar: do not fill in question title
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2013-03-28 12:40:44 -04:00 |
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James Taylor
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65950caabd
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biostar: open tool question link in new window/tab
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2013-03-28 12:38:35 -04:00 |
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Carl Eberhard
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b4827cef25
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merge next-stable
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2013-03-28 11:21:56 -04:00 |
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Carl Eberhard
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1f13e1017f
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UsesHDA: fix new-style display apps; documentation
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2013-03-28 11:21:23 -04:00 |
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James Taylor
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44eb87b8c5
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biostar: send encoded unique ID for user as username
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2013-03-27 15:36:07 -04:00 |
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Carl Eberhard
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fe9b34027f
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merge next-stable
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2013-03-27 15:32:19 -04:00 |
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Carl Eberhard
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2c70f8c2bf
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history panel: only fetch force_history_refresh for running/queued HDAs
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2013-03-27 15:31:41 -04:00 |
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Dannon Baker
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1c2ffbd58c
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Strip whitespace in jobs/__init__.py
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2013-03-27 14:27:14 -04:00 |
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Dannon Baker
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fd46d149ac
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Jobs: Fix job finish() to only set state after reconciling all outputs. This will allow us to eliminate force_history_refresh in the new history panel. Slight import cleanup.
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2013-03-27 14:26:38 -04:00 |
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Dannon Baker
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8a747d1e65
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Merged in galaxyp/galaxy-central-parallelism-refactorings (pull request #136)
select2 fixes for workflow running.
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2013-03-27 11:53:18 -04:00 |
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Dave Bouvier
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a1e6b1e8b2
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Change install and test script to never set do_not_test = True.
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2013-03-27 11:20:39 -04:00 |
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Dave Bouvier
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cd6ab96243
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Merged correctly this time.
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2013-03-27 10:10:26 -04:00 |
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Dave Bouvier
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2ede098423
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Merge next-stable.
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2013-03-27 09:53:55 -04:00 |
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Dave Bouvier
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f8e83f9aca
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Apply changes from pull request 146 by Roy Storey. Manually committed to exclude .hgflow mercurial extension configuration file.
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2013-03-27 09:52:55 -04:00 |
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Dave Bouvier
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3d4db30d35
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Apply changes from pull request 145 by Roy Storey. Manually committed to exclude .hgflow mercurial extension configuration file.
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2013-03-27 09:50:32 -04:00 |
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Nate Coraor
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cf11722fe9
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merge next-stable.
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2013-03-26 15:40:59 -04:00 |
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Nate Coraor
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4a132fb52c
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Fix setting of external metadata broken by refactoring job preparation.
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2013-03-26 15:40:36 -04:00 |
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Carl Eberhard
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64f2bcc0b1
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merge next-stable
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2013-03-26 15:11:34 -04:00 |
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Carl Eberhard
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1f7504620a
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fix for exception handling in root.history
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2013-03-26 15:10:42 -04:00 |
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James Taylor
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620263d96c
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biostar: pass slugified version of tool name as tag when sending to question form
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2013-03-26 13:04:36 -04:00 |
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