Eli Chadwick
70cd4511b0
avoid caching in python 3.9
2025-05-07 10:45:12 +01:00
Eli Chadwick
f9688c43a7
isort
2025-05-07 10:45:11 +01:00
Eli Chadwick
09458577b2
linting
2025-05-07 10:45:10 +01:00
Eli Chadwick
007541d1e3
add version check to xfail
2025-05-07 10:45:10 +01:00
Eli Chadwick
a4fbf706b4
fix version check
2025-05-07 10:45:09 +01:00
Eli Chadwick
bd4da7a339
fix problem with non-existent files failing validation
2025-05-07 10:45:08 +01:00
Eli Chadwick
d1906cbf54
work around dependency issues
2025-05-07 10:45:08 +01:00
Eli Chadwick
419930627b
work around dependency issues
2025-05-07 10:45:08 +01:00
Eli Chadwick
5cf1dde60c
checked tests
2025-05-07 10:45:07 +01:00
Eli Chadwick
ed36c907b7
add tests using roc_validator
2025-05-07 10:45:06 +01:00
mvdbeek
c03d179db0
Implement dataset collection support in workflow landing requests
...
and tweak request models to make them compatible with workflow test format
2025-04-22 14:18:47 +02:00
Nicola Soranzo
b7591a0872
Improve type annotations of `ModelPersistenceContext` and derived classes
2025-03-20 12:46:35 +00:00
Nicola Soranzo
05b9467c35
Merge branch 'release_24.2' into dev
2025-03-13 00:37:29 +00:00
John Davis
104a375ea4
Add get_private_role_user_emails_dict, test
...
Retrieves a mapping of private role ids to associated users' emails.
Used to lookup a user's email when generating a displayed_name for
private roles.
2025-03-11 00:34:22 -04:00
John Davis
c4c66078d8
Factor out get_displayable_roles, add test
2025-03-10 11:13:13 -04:00
John Davis
f2f55131b2
Fix unit tests
2025-03-10 11:13:13 -04:00
John Davis
dfe1536a5d
Update test fixture
...
Specify correct role name for private roles. See comment in make_role
definition for why this must be set.
2025-03-10 11:13:13 -04:00
Nicola Soranzo
9477c7773e
Use model classes from `galaxy.model instead of app.model` object
...
for proper type annotation of query results.
Also:
- Drop unused code from `lib/tool_shed/webapp/controllers/user.py`
- Drop Galaxy model code from
`lib/tool_shed/util/admin_util.py:Admin.purge_user()`
2025-02-26 12:41:40 +00:00
Nicola Soranzo
0f1bfb6839
Type annotation improvements
2025-02-21 15:46:14 +00:00
mjosse
c6267d690d
imrpove ro-crate with eli's review
2025-01-30 16:14:21 +01:00
Marius van den Beek
951044096c
Drop stray print statement
2025-01-30 16:14:21 +01:00
mjosse
6204702f1d
rm useless import
2025-01-30 16:14:17 +01:00
mjosse
5a2c9c3fe8
rm label
2025-01-30 16:14:17 +01:00
mjosse
89920ee828
try to fix conflicts
2025-01-30 16:14:16 +01:00
mjosse
29b9fbe860
add some tests
2025-01-30 16:14:15 +01:00
mjosse
7eee144b31
remove useless tests
2025-01-30 16:13:47 +01:00
mjosse
861174e44e
fix lint rm useless import
2025-01-30 16:13:46 +01:00
mjosse
81e055fa90
add some tests
2025-01-30 16:13:46 +01:00
John Davis
6f47682a39
Remove transaction helper from test.unit.data
2025-01-23 11:39:24 -05:00
Nicola Soranzo
aa49793ecf
Make CompressedFile a context manager
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to ensure that the archive is closed.
2025-01-18 14:40:30 +00:00
Nicola Soranzo
944450aa38
Uniform use of tmp_path in ro-crate tests
2025-01-10 15:12:17 +00:00
John Davis
16f7700ea4
Move method out of managers into model
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To accommodate package unit testing
2024-11-20 16:52:23 -05:00
John Davis
b3e57cb9a2
Cleanup sharing roles on user purge, refactor, test
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1. Update sharing role name removing purged user email
2. If sharing role has only one user association, delete it.
3. Factor out cleanup, add test.
Note: this will not work if user email has been udpated after the sharing
role was created.
2024-11-20 16:52:23 -05:00
John Davis
4be1eaf692
Update unit test w/new method name
2024-10-31 09:28:49 -04:00
John Davis and David López
4a7eb0a6ec
Fix typo
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Co-authored-by: David López <46503462+davelopez@users.noreply.github.com >
2024-10-31 09:25:48 -04:00
John Davis
16f1d3f0e3
Fix error in select, add test
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We must use a union because when we retrieve roles with a query, we
check against:
1) role name
2) email of associated user for private roles
We factor out this select into a helper method, which we then test
extensively.
2024-10-30 15:28:47 -04:00
John Davis
0e51a52272
Move test fixture to conftest
2024-10-30 15:28:47 -04:00
John Davis
e255a384cd
Modify make_role fixture to accommodate downgrading in migration tests
2024-10-30 15:28:47 -04:00
John Davis
f623ee851f
Adjust unit test: role name == user's current email
2024-10-30 15:28:47 -04:00
John Chilton
7f7710d392
Implement recovering normalized workflow request from invocation.
2024-10-15 09:12:05 -04:00
John Davis
00bebee7c7
Add test exposing bug
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After user's email has been modified, we can't retrieve sharing roles
for that user
2024-10-04 14:44:41 -04:00
John Chilton
813ed02d53
Merge pull request #18886 from jdavcs/dev_db_test_update
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Refactor migration testing setup code
2024-09-25 10:49:27 -04:00
Matthias Bernt
7dd606a6b2
Merge branch 'release_24.1' into dev
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# Conflicts:
# lib/galaxy/version.py
# packages/app/HISTORY.rst
# packages/app/setup.cfg
# packages/auth/HISTORY.rst
# packages/auth/setup.cfg
# packages/config/HISTORY.rst
# packages/config/setup.cfg
# packages/data/HISTORY.rst
# packages/data/setup.cfg
# packages/files/HISTORY.rst
# packages/files/setup.cfg
# packages/job_execution/HISTORY.rst
# packages/job_execution/setup.cfg
# packages/job_metrics/HISTORY.rst
# packages/job_metrics/setup.cfg
# packages/navigation/HISTORY.rst
# packages/navigation/setup.cfg
# packages/objectstore/HISTORY.rst
# packages/objectstore/setup.cfg
# packages/schema/HISTORY.rst
# packages/schema/setup.cfg
# packages/selenium/HISTORY.rst
# packages/selenium/setup.cfg
# packages/test_api/HISTORY.rst
# packages/test_api/setup.cfg
# packages/test_base/HISTORY.rst
# packages/test_base/setup.cfg
# packages/test_driver/HISTORY.rst
# packages/test_driver/setup.cfg
# packages/tool_shed/HISTORY.rst
# packages/tool_shed/setup.cfg
# packages/tool_util/HISTORY.rst
# packages/tool_util/setup.cfg
# packages/tours/HISTORY.rst
# packages/tours/setup.cfg
# packages/util/HISTORY.rst
# packages/util/setup.cfg
# packages/web_apps/HISTORY.rst
# packages/web_apps/setup.cfg
# packages/web_framework/HISTORY.rst
# packages/web_framework/setup.cfg
# packages/web_stack/HISTORY.rst
# packages/web_stack/setup.cfg
2024-09-25 14:29:37 +02:00
John Davis
b57ec18991
Refactor migration testing setup code
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- Do not explicitly import fixtures (a little duplication is safer/cleaner)
- Move dangerous fixture into module to prevent accidental usage from other modules
- Ensure only one database is used for all tests in module
2024-09-24 20:47:09 -04:00
John Davis
03641a98fa
Fix migration data fixes tests
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When upgrading back to a valid revision, upgrade to head, not the
revision under test: we need the latest version of the model definition
in the database for the test to cleanup correctly.
2024-09-24 16:16:05 -04:00
John Davis
5524ea77a7
Add tests for migration fixes
2024-09-23 23:52:05 -04:00
John Davis
2fc21f9962
Do not pass unnecessary arguments
2024-09-23 17:05:15 -04:00
John Davis
6c4ddeb91d
Test that private roles are not assignable
2024-09-23 17:05:15 -04:00
John Davis
8c4a90010a
Add tests for user and history default permissions
2024-09-23 17:05:15 -04:00
John Davis
19d76e9580
Fix mypy: statements are reachable
2024-09-23 17:05:15 -04:00
Eli Chadwick