mvdbeek
543b395a43
Clarify how to separate job and workflow scheduling
2025-07-09 10:22:08 +02:00
Nicola Soranzo
bd965fc733
Merge pull request #20521 from mvdbeek/bump_python_for_test_galaxy_packages_for_pulsar.yaml
...
[25.0] Bump up python for for pulsar package tests
2025-07-08 20:33:37 +01:00
Nicola Soranzo
b2215984a9
Drop support for Python 3.7 in 5 packages
2025-07-08 16:48:36 +01:00
mvdbeek
8468284d44
Bump up python for for pulsar package tests
...
We kept it going for another 2 years almost, but
https://github.com/galaxyproject/galaxy/pull/20511 breaks 3.7 (at least
for test validation, which isn't super-critical for pulsar I think?).
2025-07-08 16:37:23 +01:00
Nicola Soranzo
d95f823b3f
Merge branch 'release_24.2' into release_25.0
2025-07-07 16:06:01 +01:00
Nicola Soranzo
0cc5d77a7f
Merge pull request #20603 from davelopez/25.0_constraint_redis_version
...
[25.0] Constraint conditional `redis` version to allow only minor updates
2025-07-07 16:05:32 +01:00
Nicola Soranzo
777ec1ef42
Merge branch 'release_24.1' into release_24.2
2025-07-07 16:00:41 +01:00
John Chilton
c9bfd2fbc7
Merge pull request #20597 from davelopez/25.0_fix_workflow_loading_error_handling
...
[25.0] Fix workflow loading error handling
2025-07-07 09:55:53 -04:00
John Chilton
7e216fda58
Merge pull request #20599 from jdavcs/24.1_objstore_set_attr
...
[24.1] Do not set attribute on a namedtuple
2025-07-07 09:55:11 -04:00
David López and Marius van den Beek
bad87c198a
Add comment for version constraint
...
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com >
2025-07-07 15:33:21 +02:00
davelopez
acd6798198
Update redis version constraint to allow only minor updates
2025-07-07 15:06:46 +02:00
Marius van den Beek
b2e75709c6
Merge pull request #20596 from davelopez/25.0_fix_invalid_workflow_uuid
...
[25.0] Prevent importing workflows with invalid step UUID
2025-07-04 18:38:12 +02:00
John Davis
8711543bb8
Do not set attribute on a namedtuple
2025-07-03 16:29:55 -04:00
David López and Nicola Soranzo
1708721eab
Refactor test to simplify assertion
...
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2025-07-03 14:07:42 +02:00
davelopez
bf39fe242a
Fix error handling in workflow load function
2025-07-03 14:00:16 +02:00
davelopez
a773285183
Clarify exception message for invalid UUID version 4
2025-07-03 13:36:48 +02:00
davelopez
7318b85469
Add test for invalid UUID v4 format in workflow steps
2025-07-03 13:33:06 +02:00
Marius van den Beek
b93d94a2c1
Merge pull request #20593 from mvdbeek/fix_containerized_tools_without_tool_directory
...
[25.0] Don't fail volume mount construction for tools without tool directory
2025-07-03 06:12:37 -04:00
davelopez
8ca67561b0
Validate UUID v4 format for workflow steps on import
2025-07-03 10:21:56 +02:00
davelopez
5b6c478789
Add utility function to validate UUID v4 format
2025-07-03 10:20:43 +02:00
mvdbeek
66266f39f8
Don't fail volume mount construction for tool_directory-less tools
...
Dev's hate this one simple trick: https://github.com/galaxyproject/usegalaxy-playbook/blob/4963808ac295ef49b786f619b5b659d158e0be0b/env/main/group_vars/galaxyservers/vars.yml#L133
2025-07-02 16:54:26 +02:00
mvdbeek
0cf6540485
Merge branch 'release_24.2' into release_25.0
2025-07-02 16:37:04 +02:00
John Chilton
cb97a19aef
Merge pull request #20582 from mvdbeek/apply_rules_fix
...
[24.2] Fix apply rules ownership check
2025-07-02 10:23:44 -04:00
Marius van den Beek
cb93c7b976
Merge pull request #20502 from davelopez/add_redis_conditional_dependency
...
[25.0] Add redis conditional dependency
2025-07-01 10:58:00 -04:00
Nicola Soranzo
d1b821ab08
Merge pull request #20571 from natefoo/fix-prepare-dirs
...
[25.0] Don't assume cwd = job directory when running prepare dirs
2025-06-30 00:38:12 +01:00
mvdbeek
06498946fc
Fix apply rules ownership check
2025-06-28 14:59:17 -04:00
Nate Coraor
c5fb942ef2
Don't assume cwd = job directory when running prepare dirs
2025-06-27 13:39:45 -04:00
John Chilton
6a9010142c
Merge pull request #20566 from natefoo/fix-24.2-requests-unixsocket
...
[24.2] Upgrade requests-unixsocket for requests compatibility
2025-06-26 11:42:55 -04:00
David López
a3e8ea73b0
Merge pull request #20565 from itisAliRH/fix-25.0-datasets-details-route-name
...
[25.0] Fix Storage Dashboard Link to Dataset Details
2025-06-26 10:17:16 +02:00
Nate Coraor
8f5147488a
Version split requests-unixsocket
2025-06-25 15:21:48 -04:00
Nate Coraor
161ce32729
Upgrade requests-unixsocket for requests compatibility
2025-06-25 15:07:55 -04:00
Alireza Heidari
8cc3267c0a
Adds route name for dataset details view
...
Adds a name property ("DatasetDetails") to the dataset view route to use reference in router.
2025-06-25 19:44:29 +02:00
John Chilton
4ef3df9e59
Merge pull request #20546 from nsoranzo/release_25.0_fix_package_descriptions
...
[25.0] Fix description and metadata of some packages
2025-06-25 13:21:12 -04:00
David López
cd40df30f2
Merge pull request #20558 from itisAliRH/fix-25-workflow-invocation-report-pdf
...
[25.0] Fix workflow invocation report pdf generate
2025-06-25 15:53:45 +02:00
Alireza Heidari
e20dd61634
Refactors workflow report PDF download
...
Replaces `StsDownloadButton` with a conditional `GButton` for direct PDF downloads.
Removes unused `directDownloadLink` prop and related logic from `StsDownloadButton`.
Use `outline` prop in `AsyncButton`.
2025-06-25 14:22:34 +02:00
Alireza Heidari
a5557a7579
Adds support for direct download links in markdown exports
...
Adds a `directDownloadLink` prop to enable direct file downloads without an intermediate storage API call.
Fix WF invocation report pdf download
2025-06-25 12:56:14 +02:00
Martin Cech
655da84087
Merge pull request #20550 from dannon/activity-bar-order-fix
...
[25.0] Fix activity bar reordering persistence
2025-06-25 09:16:54 +02:00
Marius van den Beek
ca0f378ff6
Merge pull request #20552 from dannon/fix-pdf-display
...
[25.0] Fix PDF preview functionality in dataset view
2025-06-24 11:25:14 -04:00
Dannon Baker
60ebeb7781
Fix PDF preview functionality in dataset view
...
This is a quick fix for 25.0, but I want to think more about the right
way to annotate these more cleanly moving froward. PDFs were being
caught by auto-download logic instead of rendering inline due to their
display_behavior setting, now explicitly handle PDFs before
auto-download check to restore browser-based PDF viewing.
2025-06-24 09:51:38 -04:00
Dannon Baker
dabbe3359b
Fix activity bar reordering persistence
...
Activity bar reordering was broken when the activities computed property
was changed from a direct store reference to a read-only computed
property with filtering.
Fixes #20499
2025-06-24 09:20:36 -04:00
Marius van den Beek
89b37a6701
Merge pull request #20545 from mvdbeek/fix_user_defined_tool_extension
...
[25.0] Fix restricting user defined tool input datasets extensions
2025-06-23 09:22:50 -04:00
Nicola Soranzo
e8bdedef47
Fix description and metadata of some packages
2025-06-23 13:12:49 +01:00
davelopez
f3ae4b2fd5
Improve Redis URL validation in conditional dependencies check
2025-06-23 11:28:31 +02:00
davelopez
74a4f30c5b
Fix format
2025-06-23 09:17:07 +02:00
mvdbeek
462955599b
Fix extension parsing for yaml tools
2025-06-22 19:22:59 -04:00
Nicola Soranzo
1cc2d6e5e6
Merge branch 'release_24.2' into release_25.0
2025-06-22 12:56:24 +01:00
Marius van den Beek
6fe8a7bf6d
Merge pull request #20464 from mvdbeek/drop_num_unique_values
...
[25.0] Remove ``num_unique_values`` tiff metadata element
2025-06-22 08:32:30 +02:00
Marius van den Beek
8903af6964
Merge pull request #20534 from ahmedhamidawan/fix_can_rename_nested_pair
...
[25.0] Prevent DCE collections from being renamed
2025-06-22 08:31:56 +02:00
Marius van den Beek
4368e15f01
Merge pull request #20542 from nsoranzo/release_24.2_fix_doc_versioning
...
[24.2] Fix docs versioning
2025-06-22 08:30:50 +02:00
Ahmed Awan
97aa3a3add
fix AXE error
2025-06-21 17:31:54 -05:00
mvdbeek