 Carl Eberhard
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505684068b
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history panel: move history options menu code into index.mako, localization pass; pack scripts
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2013-04-11 16:48:47 -04:00 |
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Jeremy Goecks
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cef261c987
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Merge in stable branch.
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2013-04-11 13:17:30 -04:00 |
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Jeremy Goecks
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44f55ec6b7
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Do not escape backslashes in sweepster config.
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2013-04-11 13:16:36 -04:00 |
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Carl Eberhard
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062387374c
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base_panels: move quota meter js into base_panels, provide bootstrapped user JSON, create Galaxy js namespace; history panel: don't use backbone-relational in dataset, user, or history; misc jsHint cleanup; expose_api: defend against no key provided; pack scripts
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2013-04-11 13:00:38 -04:00 |
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Dannon Baker
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ba8f274aa8
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Merge back with central.
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2013-04-11 11:57:50 -04:00 |
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Jeremy Goecks
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56ace38270
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Whitespace fixes for Vcf datatype.
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2013-04-11 08:44:42 -04:00 |
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Aysam Guerler
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959a335b67
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Enhance button for trackster visualization in data display viewer
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2013-04-10 17:30:27 -04:00 |
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Aysam Guerler
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28792f5e52
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Enhance button for trackster visualization in data display viewer
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2013-04-10 16:50:54 -04:00 |
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Dannon Baker
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ef73a7b7bf
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Merge with -central
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2013-04-10 14:04:50 -04:00 |
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Dannon Baker
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3c046de0aa
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Remove unused css from search page
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2013-04-10 14:04:31 -04:00 |
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Dannon Baker
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78a4042517
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Fixes for Search API.
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2013-04-10 13:59:33 -04:00 |
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Aysam Guerler
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a6b0cdcfc4
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Enhance button for trackster visualization in data display viewer
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2013-04-10 13:19:10 -04:00 |
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Dannon Baker
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f1317d6a51
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Merge pull request 137: Galaxy Search Engine.
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2013-04-10 12:56:00 -04:00 |
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Carl Eberhard
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b1c3cb55ff
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Edit attributes: HDA name, info, annotation: display 'None' values in inputs as empty strings; History panel: remove last modal/alert
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2013-04-10 12:22:11 -04:00 |
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Carl Eberhard
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73a4e9ded6
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History panel: hack to show expanded HDA bodies in chrome; pack scripts
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2013-04-10 11:30:37 -04:00 |
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Jeremy Goecks
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4ce073f25a
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Trackster: Implement and use reference-based read drawing when genome reference is available. This reduces the data transfer for read tracks by ~50%. Fix bugs in reference-based data provider code and remove client-side debugging statements.
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2013-04-10 10:34:30 -04:00 |
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Carl Eberhard
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f799e0fded
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history panel: handle errors better on the client side, remove alerts, continue update attempts if error is 'Bad Gateway'
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2013-04-09 19:17:51 -04:00 |
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Jeremy Goecks
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e2e4448c3c
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Custom build bug fix to indicate availability of reference data during conversion. Parameter cleanup via Pylint as well.
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2013-04-09 16:48:08 -04:00 |
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Carl Eberhard
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be0a279497
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remove debugging
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2013-04-09 16:42:08 -04:00 |
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Carl Eberhard
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551cf6b971
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history panel: better error-handling
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2013-04-09 16:39:43 -04:00 |
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Aysam Guerler
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6cc810345b
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Enhance button for trackster visualization in data display viewer
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2013-04-09 13:59:56 -04:00 |
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Dannon Baker
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53e5eb371d
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Add missing imports to tool shed repository API. Add NERD_tree_2fixme for variable used out of context
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2013-04-09 13:42:27 -04:00 |
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Dannon Baker
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a02919c0b0
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Fix string templating mismatch in tool shed repository API. Similar to 9328:b2a5169daea4
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2013-04-09 13:36:18 -04:00 |
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Dannon Baker
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924d0a0896
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Add Parsley egg prior to merging search API.
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2013-04-09 13:20:29 -04:00 |
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Daniel Blankenberg
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73843b539d
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Change database logging of stderr and stdout to take text from start and end of the string (instead of just the start) when the size exceeds the set character limit (32k).
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2013-04-09 13:00:47 -04:00 |
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Daniel Blankenberg
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0b17de996b
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Fix for generating stderr/stdout links in hda show_params.
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2013-04-09 12:26:05 -04:00 |
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James Taylor
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d02155ad7b
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Require Python 2.6+ and remove various compatibility patches for 2.4 and 2.5
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2013-04-09 11:57:38 -04:00 |
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Carl Eberhard
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e9797bacee
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history panel: move alternate_history.mako to history.mako
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2013-04-09 10:58:38 -04:00 |
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Dannon Baker
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ccaf1865ed
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Merged in BjoernGruening/galaxy-central-bgruening/error-message-fix (pull request #150)
change error message
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2013-04-09 09:56:12 -04:00 |
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Dannon Baker
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3651f2b74e
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Import cleanup, space methods, strip trailing whitespace.
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2013-04-09 09:36:23 -04:00 |
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Dannon Baker
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440cd89c74
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Fix bug from 8333 which prevented ToolDataTable loading .loc files from directories other than the default galaxy tool_data_path.
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2013-04-09 09:34:24 -04:00 |
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Kyle Ellrott
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75d343930e
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Merge and check to see if hda.history is not null before adding history id in get_api_value
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2013-04-08 22:33:01 -07:00 |
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Kyle Ellrott
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9e49883204
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Adding ldda parent_library_id field to search.
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2013-04-08 22:25:02 -07:00 |
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Jeremy Goecks
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2e1f98d430
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Merged in galaxyp/galaxy-central-parallelism-refactorings (pull request #140)
Improvements to Tool XML Macroing System
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2013-04-08 17:10:21 -04:00 |
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Nate Coraor
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505f4409ef
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Merged stable.
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2013-04-08 12:30:08 -04:00 |
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Nate Coraor
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9d2d364f82
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Added tag security_2013.04.08 for changeset 2cc8d10988e0
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2013-04-08 12:28:46 -04:00 |
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Dannon Baker
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d008db0e06
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Add Reports runtime files to .hgignore
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2013-04-08 10:56:26 -04:00 |
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Aysam Guerler
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1633386bfc
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Inserted a button for trackster visualization into the BED-file data display viewer.
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2013-04-08 10:19:37 -04:00 |
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Bjoern Gruening
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dadda8f1e0
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change error message
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2013-04-06 15:00:37 +02:00 |
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Nate Coraor
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08986d7cb2
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Merged in jmchilton/galaxy-central-multi-input-tool-fixes-2 (pull request #143)
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2013-04-05 17:05:41 -04:00 |
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Carl Eberhard
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16ea5d52d0
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controllers/root.default: have default return the same message as a 404 (HTTPNotFound)
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2013-04-05 17:02:07 -04:00 |
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Dannon Baker
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4e18f06a29
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Relocate TracksterConfig import in tools package to avoid circular import w/ visual_analytics that was preventing the reports app from functioning.
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2013-04-05 15:58:31 -04:00 |
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Carl Eberhard
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4477aeab85
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history panel: do not fetch display apps if there are no hdas yet
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2013-04-05 14:01:59 -04:00 |
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Carl Eberhard
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b02f3851e9
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history panel: fix test for partial/full render of hdas to prevent 'blinking'2
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2013-04-05 13:50:24 -04:00 |
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Carl Eberhard
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0cc21367d2
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merge to stable
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2013-04-05 13:09:11 -04:00 |
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Carl Eberhard
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2475ede3de
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controllers/history: use get_history in switch_to_history
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2013-04-05 13:07:50 -04:00 |
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Dave Bouvier
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9dbf1f4abb
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Tool shed functional test enhancements. Tests for 8-bit ASCII characters displayed in repository files. Tests for using the mercurial API to simulate a command line push. Tests for deleting tool dependencies.
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2013-04-05 11:18:39 -04:00 |
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Jeremy Goecks
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501195c101
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Implement a reference-based compression approach for encoding aligned reads' sequence and cigar. Move cigar functions into own file.
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2013-04-05 09:39:05 -04:00 |
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Carl Eberhard
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581f726e87
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controllers/root: remove methods my_data, dataset_state, dataset_code; add documentation; clean imports
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2013-04-04 20:08:58 -04:00 |
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Carl Eberhard
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a391e6c3e2
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Remove history.mako; old history panel from root.history; remove from root: user_get_usage, history_item_updates, history_get_disk_size
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2013-04-04 18:16:46 -04:00 |
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