Dannon
4fbcb32a8f
Merge pull request #11883 from mvdbeek/speed_up_get_history_list
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Speed up get history list
2021-04-22 10:46:50 -04:00
mvdbeek
46029a5b38
Get less-expensive summary view when getting list of histories
2021-04-22 15:25:08 +02:00
Marius van den Beek
4026686736
Merge pull request #11879 from Nerdinacan/reposition-history-updates-2
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Reposition history scroller during new updates
2021-04-22 13:20:31 +02:00
Mason Houtz
61fcd517d6
Defaulted new optional params, fixed user histories tests
2021-04-21 16:03:45 -07:00
Mason Houtz
4156ac1d1d
removed debugging tap
2021-04-21 15:54:39 -07:00
Mason Houtz
31c26843d2
initial implementation
2021-04-21 15:46:03 -07:00
Dannon
c87793826d
Merge pull request #11850 from Nerdinacan/current-history-mismatch
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Beta history current history mismatch with legacy code.
2021-04-21 18:29:23 -04:00
Mason Houtz
7a5a43df19
fixed flaw in beta history creation and deletion tracking
2021-04-21 12:06:13 -07:00
John Chilton
d2c4a4f6aa
Merge pull request #11872 from davelopez/fastapi_entry_points
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Create FastAPI entry points for Tool Shed and Reports
2021-04-21 14:23:04 -04:00
Nicola Soranzo
4ed55da501
Merge pull request #11818 from bernt-matthias/topic/url_chown
2021-04-21 17:16:49 +01:00
Dannon
52c8a674d0
Merge pull request #11868 from mvdbeek/handler_column_in_admin_jobs
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Add handler column in admin jobs, remove webcontroller
2021-04-21 11:08:54 -04:00
Marius van den Beek and Dannon
79b060ba5f
Improve date-fns imports
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Co-authored-by: Dannon <dannon.baker@gmail.com >
2021-04-21 16:19:21 +02:00
Dannon
e975ac70df
Merge pull request #11874 from bernt-matthias/topic/add-tags-dox-test
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add a bit of docs to the add tags tool
2021-04-21 08:53:58 -04:00
M Bernt and Nicola Soranzo
00a0c20071
Update lib/galaxy/datatypes/sniff.py
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-04-21 14:41:13 +02:00
mvdbeek
7febfd345f
Don't return empty array for job store getter
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job is a single object, it doesn't really make sense to return an array
here.
2021-04-21 12:04:30 +02:00
mvdbeek
11342cc03f
And then switch to date-fns
2021-04-21 12:04:30 +02:00
Matthias Bernt
fad108f12f
add a bit of docs to the add tags tool
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and extend test for group tags
2021-04-21 11:45:07 +02:00
davelopez
db464b1c93
Move common FastAPI configuration code to webapps/base/api.py
2021-04-21 11:31:37 +02:00
davelopez
2dd7d1dc57
Unify fast_factory config resolution
2021-04-21 11:31:37 +02:00
davelopez
4d6f9358f7
Add basic FastAPI metatada to entry points
2021-04-21 11:31:37 +02:00
davelopez
6ffa07d1bb
Add minimal fast_app for the reports app
2021-04-21 11:31:37 +02:00
davelopez
45de3f337d
Add minimal fast_app for the ToolShed
2021-04-21 11:31:37 +02:00
mvdbeek
2afa09e64c
Switch out moment-duration-format to luxon
2021-04-21 11:09:30 +02:00
M Bernt and Nicola Soranzo
0796211712
Apply suggestions from code review
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-04-21 09:11:35 +02:00
Dannon
a277c2421a
Merge pull request #11789 from mvdbeek/history_export_task
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Run history export setup via celery, if configured
2021-04-20 20:55:06 -04:00
Dannon
ddbc67d83e
Merge pull request #11863 from guerler/import_history
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Allow importing histories through pages / reports
2021-04-20 20:46:31 -04:00
John Chilton
9f8ce3d0cb
Merge pull request #11871 from simonbray/swid
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Expose StoredWorkflowId in invocation API
2021-04-20 14:20:29 -04:00
Simon Bray
8791f7e7e2
expose StoredWorkflowId in invocation API
2021-04-20 17:42:51 +02:00
mvdbeek
f85086f6d5
Assert file:// urls are not being downloaded without explicit handling
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And allow file_sources in add_composite_file to_path
2021-04-20 16:24:41 +02:00
mvdbeek
1f95359b1d
Remove job_list controller endpoint, add handler column to job_list
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This should help debugging failures in job handler assignment.
I think that's a timely change with our switch to grabbing assignment by
default.
2021-04-20 14:09:37 +02:00
guerler
a10b3a2fab
Add history_link markdown basic test case
2021-04-19 21:43:20 -04:00
guerler
2516c4da94
Add handle history link to directive handler
2021-04-19 21:28:00 -04:00
guerler
e44747d30a
Allow history link option for invocations in workflow editor report
2021-04-19 15:40:32 -04:00
guerler
73cf64595b
Rename history_import to history_link
2021-04-19 15:20:03 -04:00
John Chilton
d50579d37f
Merge pull request #11849 from mvdbeek/restore_update_time_query
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Fix collection state updates by setting collection update time
2021-04-19 14:41:39 -04:00
guerler
1abdead269
Hide import link with resulting import message
2021-04-19 14:21:49 -04:00
guerler
452b61f204
Use new line to show import message
2021-04-19 14:19:24 -04:00
guerler
f00479e847
Add error details to output message if importing history fails.
2021-04-19 14:06:43 -04:00
guerler
b29cd4e824
Remove unused import
2021-04-19 13:52:56 -04:00
guerler
2208de874a
Parse history name to page client, post import request to histories api
2021-04-19 13:46:45 -04:00
Dave Clements
5f5852c301
Merge pull request #11750 from galaxyproject/coc
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[PROCEDURES] Updated Code of Conduct to point to the exact copy of this CoC on the hub.
2021-04-19 10:19:49 -07:00
guerler
54a927af7c
Add new element to pages, allow history import
2021-04-19 12:51:52 -04:00
John Chilton
5c6b738fc5
Merge pull request #11861 from rhpvorderman/patch-3
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BUGFIX: Also check for boolean True, not just string 'True' when evaluating conditional dependencies.
2021-04-19 10:01:42 -04:00
Ruben Vorderman
4361e1001d
Also check for boolean True, not just string 'True' when evaluating conditional dependencies.
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When people know how actual yaml works they might have
galaxy:
watch_tools: true
as their config. Which signifies an actual Boolean value. This should be considered by the script as well.
2021-04-19 14:12:02 +02:00
Marius van den Beek
7cf7e1b737
Merge pull request #11844 from simonbray/wf-check-tools
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Do not invoke workflow if not all tools are available
2021-04-19 09:34:05 +02:00
Marius van den Beek
87a71e061f
Merge pull request #11856 from davelopez/unify_security_decode_id_exceptions
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Unify security decode id exceptions
2021-04-19 09:15:37 +02:00
davelopez
37f32c444d
Remove helper _decode_id in resource_parser
2021-04-17 21:23:48 +02:00
David López and Nicola Soranzo
1c41c8d8af
Apply suggestions from code review
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-04-17 20:49:16 +02:00
davelopez
cc4847e4fd
Replace helpers with direct call as suggested by code review
2021-04-17 20:08:21 +02:00
Simon Bray
51ee555b40
do not invoke workflow if not all tools are available
2021-04-17 15:41:50 +02:00
Dannon