James Taylor
537f8952ef
Merging Ian's trackster update with current head
2009-06-11 12:20:03 -04:00
Guruprasad Anada
c072bd4b4a
Added functional tests for testing sniffing and metadata settings of qual454 and qualsolid datatypes.
2009-04-29 16:32:23 -04:00
Guruprasad Anada
ee3cddc5df
Replacing \"qual\" datatype with 3 new datatypes: qualsolid, qual454 and qualsolexa.
2009-04-29 11:53:22 -04:00
Ian Schenck
feda672ffa
- Performance of indexers much improved.
...
- Indexing for tracks done in background with a visual treatment done to Trackster
- DB builds can be uploaded by a user (chromInfo/len extension).
- TODO: Add ability to change the dbkey of a dataset to any arbitrary string value.
2009-04-23 13:46:52 -04:00
Ian Schenck
985f7c63fa
Collapsed changeset: Trackster plugged into galaxy with behind-the-scenes indexing of Wiggle, coverage and interval datasets.
2009-03-11 00:29:01 +00:00
Nate Coraor
3058943a20
Backed out changeset 54276449337f
2009-03-05 20:31:52 -05:00
Ian Schenck
62fa85d78f
Backed out changeset 43786ade15d4
2009-03-05 19:36:52 +00:00
Nate Coraor
7da7368e55
Backed out changeset 71e66174dca2
2009-03-05 10:15:31 -05:00
Ian Schenck
b5f93ebc12
Combining changesets for tracks (lots of noise and not a lot of signal). This is a rough prototype of the tracks extension to Galaxy.
2009-03-04 23:55:51 +00:00
Nate Coraor
2af2414e5f
SolidQual -> Qual, add missing test datasets
2009-01-30 12:22:21 -05:00
Ian Schenck
82d09f5824
Finally remerged changeset. Should be good now.
2009-01-21 16:48:54 -05:00
Nate Coraor
427bc02028
Backed out changeset 83a0c394a797
2009-01-21 16:03:59 -05:00
Ian Schenck
b8e76a8ca6
Made Genetrack load only if the dependencies import
2009-01-21 11:45:30 -05:00
Ian Schenck
7dc603afaf
Merged in changes from remote head
2009-01-19 17:46:23 -05:00
Ian Schenck
6a0aa166aa
Initial GeneTrack commit. Most parts are in, but dependencies will still be a problem.
2009-01-19 17:45:28 -05:00
Greg Von Kuster
d8e76ff77a
merging from central
2009-01-15 14:26:28 -05:00
Greg Von Kuster
fa6155cc3f
Eliminate the use of the "order=" for the sniffers in datatypes.conf - since we've moved from using an ini file to an xml file, ordering is implicit.
2009-01-15 14:23:53 -05:00
Nate Coraor
e9d2b617be
Datatypes config for solidqual, as well as solidqual and csfasta sniffers
2009-01-13 16:40:23 -05:00
Greg Von Kuster
86c7a80c31
Add support for NCBI Blast XML data format.
2009-01-07 12:20:35 -05:00
Greg Von Kuster
b7c0bbc280
merging from central
2009-01-07 12:19:58 -05:00
Daniel Blankenberg
c8a71a49f8
Add RGenetic datatypes to datatypes.conf.sample and remove the always true sniff method of SNPMatrix
2008-12-01 13:24:01 -05:00
Greg Von Kuster
288912ee87
Fixes for data_source tools, data.name, data.info, data.dbkey, and data.extension should now be properly set. Eliminated fastq data type from datatypes_conf.xml.sample since it is not a supported data type.
2008-10-17 10:46:29 -04:00
Wen-Yu Chung
0021c40c85
add shrimp_color_space mapping tool with functional test data.
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add a new datatype called csfasta.
2008-10-13 15:06:42 -04:00
Greg Von Kuster
666de20b4d
Cleanup for fastqsolexa data type converters. We are currently supporting only the Solexa variant and will add support for other variants when the formats stabilize.
2008-06-09 20:15:04 +00:00
Greg Von Kuster
599fd15a00
Requires Galaxy config change - merged former Galaxy config [datatypes] and [sniff order] sections, along with former datatype_converters.xml into 1 xml file, datatypes_conf.xml.
...
The new datatypes_conf.xml.sample should be copied to datatypes_conf.xml.
2008-06-09 15:20:42 +00:00
James Taylor