guerler
3e4058f098
Fix styling, fix data submission for history endpoint
2017-11-12 10:50:44 -05:00
guerler
f776229db4
Add history import
2017-11-11 12:28:21 -05:00
guerler
6879507fef
Add js history form view
2017-11-11 12:02:56 -05:00
John Chilton
84c40e94d0
Merge pull request #4939 from mvdbeek/cram_to_bam
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Add CRAM to BAM converter
2017-11-10 10:25:22 -05:00
Nicola Soranzo
0982dc0f04
Merge pull request #4968 from martenson/readme
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readme - bring on par with manage dependencies feature
2017-11-09 17:13:11 +00:00
Martin Cech
c1421fda32
add dot
2017-11-09 12:02:06 -05:00
Martin Cech
0a3b525543
Merge pull request #4967 from dannon/fix-admin-panel
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Fix up reports javascript
2017-11-09 11:42:06 -05:00
Martin Cech
b0c7d8da23
bring readme on par with features
2017-11-09 11:38:45 -05:00
Martin Cech
5df61d91f3
fi xlink to deps
2017-11-09 11:16:40 -05:00
Martin Cech
76d4afe3a6
Merge pull request #4965 from jmchilton/hdca_creation_api_clarification
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Test both endpoints for collection creation in history contents API.
2017-11-09 11:01:47 -05:00
Martin Cech
8ce7d29490
Merge pull request #4964 from dannon/prettier_upgrade_18
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Prettier upgrade
2017-11-09 10:51:16 -05:00
Dannon Baker
eac8573a3c
Swap from event.path to event.target.parentElement for compatibility
2017-11-09 10:37:13 -05:00
Dannon Baker
03a033e3c7
More cleanup for reports/run_stats
2017-11-09 08:53:56 -05:00
Dannon Baker
dd1f69ad5c
D3 imports (note the currentEvent hack needed; babel known issue with binding)
2017-11-09 08:42:29 -05:00
Dannon Baker
92519e5a56
Fix up admin panel's run_stats.
2017-11-09 08:37:31 -05:00
John Chilton
4d2a3c6074
Test both endpoints for collection creation in history contents API.
2017-11-09 05:20:03 -05:00
Dannon Baker
372d65d239
Upgrade prettier, fixes comment formatting and handles string literals a little better.
2017-11-08 17:37:46 -05:00
Martin Cech
963cfd1a3f
Merge pull request #4957 from dannon/inisamplecleanup
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Remove invalid user preferences beta (no longer a beta, always enabled)
2017-11-08 12:20:27 -05:00
Dannon Baker
92c6f36e55
Merge pull request #4952 from guerler/fix_visualization_link
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Fix visualization link in import success message
2017-11-08 12:07:06 -05:00
guerler
e5463eee8a
Rewrite route without controller
2017-11-08 11:50:47 -05:00
Dannon Baker
f50db592cc
Blank line
2017-11-08 11:19:59 -05:00
Dannon Baker
98d349332f
Remove from unit test samples, as well.
2017-11-08 11:17:40 -05:00
Dannon Baker
a50d56e952
Various spelling issues in galaxy.ini.sample.
2017-11-08 11:06:28 -05:00
Dannon Baker
abd9dff404
Remove no-longer-valid feature toggle for enable_sequencer_communication
2017-11-08 10:55:36 -05:00
Dannon Baker
03dccbae93
Remove no-longer-beta feature toggle for run_workflow_toolform_upgrade
2017-11-08 10:53:51 -05:00
Dannon Baker
4c6fdf660c
Remove invalid user preferences beta (no longer a beta, always enabled)
2017-11-08 10:51:15 -05:00
John Chilton
3b4b97a2ed
Merge pull request #4849 from mtekman/iqtree
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Add IQtree datatypes
2017-11-08 10:38:41 -05:00
Mehmet Tekman
e347aed810
fix to datatype and sniffer
2017-11-07 21:50:21 +01:00
guerler
bdc3a0be5d
Fix visualization import link in success message
2017-11-07 14:22:52 -05:00
Marius van den Beek
855ea1a6a2
Merge pull request #4951 from guerler/fix_center_multi_operation
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Fix multiple selections for grid operations redirecting to center panel
2017-11-07 19:43:08 +01:00
guerler
2e9bf40095
Fix multi operations if grid operations redirects into center panel
2017-11-07 12:18:43 -05:00
Aysam Guerler
74b37a9de9
Merge pull request #4948 from dannon/fix_trackster_styles
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Fix trackster styles bleeding into the app (the slightly offcenter upload .icon buttons)
2017-11-06 17:03:22 -05:00
John Chilton
83eefb6b04
Merge pull request #4945 from nsoranzo/refactor_shell_commands
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Activate mulled dependencies once per job
2017-11-06 15:42:40 -05:00
Dannon Baker
9c47e957c3
Bump cssloadfiles to when the views are actually created
2017-11-06 15:25:27 -05:00
Dannon Baker
e8c5ea7ad6
Leave trackster .icon styles in (but commented) since there exists some commented code that may need it as a reference.
2017-11-06 15:24:20 -05:00
Dannon Baker
89c83845a1
Remove unused trackster styles.
2017-11-06 15:24:20 -05:00
Mehmet Tekman
4bca1a77cc
Merge branch 'dev' of github.com:galaxyproject/galaxy into iqtree
2017-11-06 20:20:47 +01:00
Mehmet Tekman
5b594ae255
moved from data to text
2017-11-06 20:16:30 +01:00
Mehmet Tekman
77c4ccc655
Merge branch 'iqtree' of github.com:mtekman/galaxy into iqtree
2017-11-06 20:07:25 +01:00
Dannon Baker
363a2e0636
Merge branch 'fix_download_button' into dev
2017-11-06 13:43:40 -05:00
Dannon Baker
c10da91220
Merge branch 'ajax-es6' into dev
2017-11-06 13:39:17 -05:00
mvdbeek
11a9abbb2d
Return an OrderedSet of dependencies instead of a list
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This avoids activating mulled dependencies multiple times and fixes
https://github.com/galaxyproject/galaxy/issues/4821 . We use OrderedSet because
the order of activation may matter for toolshed dependencies.
2017-11-06 16:36:48 +00:00
Nicola Soranzo
8ef1e51a4a
Remove requirement from shell_commands() parameters
2017-11-06 16:28:59 +00:00
Dannon Baker
ff5c551042
Merge pull request #4935 from jmchilton/selenium_client_logging
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Enable Galaxy client logging during Selenium tests.
2017-11-06 10:07:55 -05:00
mvdbeek
63a3fa483f
Point download button for collections to api/dataset_collections
2017-11-06 12:35:51 +01:00
mvdbeek
2faf8577ab
Use a collection's history if trans has no history
2017-11-06 12:35:51 +01:00
mvdbeek
f927ded864
Add dataset collectino route without history id
2017-11-06 11:42:49 +01:00
mvdbeek
50de5081d6
Add CRAM to BAM converter
2017-11-06 10:24:16 +01:00
John Chilton
128b0a239b
Merge pull request #4934 from mvdbeek/download_list_list
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Fix downloading of arbitrarily-nested collections
2017-11-05 14:52:30 -05:00
John Chilton
e30df782e4
Rebuild client.
2017-11-05 14:38:29 -05:00
guerler