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Author SHA1 Message Date
Nicola Soranzo ffb41c2013 Don't move the update_time goalpost 
In the previous implementation, the tests will raise an Exception if
the dataset collection were updated between `self._get_content()` and
`datetime.utcnow()` .
 2021-05-05 14:27:36 +01:00
Nicola SoranzoandDannon 8e6d56bf3a Fix indentation 
Co-authored-by: Dannon <dannon.baker@gmail.com>
 2021-05-05 13:56:07 +01:00
Nicola Soranzo 6430408fa0 Fix GET /api/datasets/ docs 2021-05-05 13:13:01 +01:00
Marius van den Beek 632d734b18 Merge pull request #11928 from jmchilton/filter_types_fixup 
Fix up package structure for recent filter linting changes.
 2021-05-05 10:48:10 +02:00
Nicola Soranzo 9e3524e542 Merge pull request #11929 from mvdbeek/change_default_milestone 
Move default PR milestone to 21.09
 2021-05-05 02:18:10 +01:00
almahmoud 2d9a7e28b9 Using guest_ports 2021-05-04 20:14:56 -04:00
almahmoud 63510bea23 Container monitor in destination 2021-05-04 17:09:23 -04:00
mvdbeek 73b6b1479d Move default PR milestone to 21.09 2021-05-04 22:17:58 +02:00
John Chilton 112a55ede5 Fixup filter type linting imports. 2021-05-04 15:38:18 -04:00
Dannon ec31c1a8c0 Merge pull request #11925 from dannon/eslint-fix 
Eslint tweaks
 2021-05-04 14:58:21 -04:00
mvdbeek 89e5994219 Merge branch 'release_21.01' into dev 2021-05-04 20:03:58 +02:00
Alexandru MahmoudandMarius van den Beek 10b5bfb572 Removing debug comment 
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
 2021-05-04 13:57:06 -04:00
almahmoud caa482115e More cleanup 2021-05-04 13:56:05 -04:00
almahmoud d4660e6f38 linting 2021-05-04 13:51:20 -04:00
Alexandru MahmoudandMarius van den Beek 33461fd5e4 Change error message 
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
 2021-05-04 13:49:51 -04:00
almahmoud ec026579a5 Ingress spec 2021-05-04 13:48:00 -04:00
almahmoud 7bfa28dfa8 Ingress api version and raise job creation exception 2021-05-04 13:38:17 -04:00
Alexandru MahmoudandMarius van den Beek 56cef15b6e Linting order 
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
 2021-05-04 13:23:52 -04:00
Marius van den Beek 7504b8f22b Merge pull request #11922 from scholtalbers/feature/dataset_expose_copied_from_ldda_ 
expose copied_from_ldda_id on dataset api endpoint
 2021-05-04 19:10:18 +02:00
Marius van den Beek d8e261dbc2 Merge pull request #11859 from bernt-matthias/topic/grep-header 
grep, tail, head: add option to keep header
 2021-05-04 19:07:46 +02:00
Marius van den Beek 40e73295a6 Merge pull request #11923 from cat-bro/fix_legacy_grids_state_column 
[21.01] update legacy_framework.grids.StateColumn (bug fix)
 2021-05-04 15:42:53 +02:00
Dannon c3fc591148 Merge pull request #11902 from mvdbeek/try_dropping_metadatatype_for_hda_metadata 
Make _metadata regular JSONType field
 2021-05-04 09:39:27 -04:00
Dannon Baker a28abac15a Fix all curly errors, fix formatting. 2021-05-04 09:29:55 -04:00
Dannon Baker 493e6f82be Add curly enforcement -- this came up in sharing PR as more readable when consistent 2021-05-04 09:28:51 -04:00
Dannon Baker d3bee27c32 Fix attribute hyphenation errors 2021-05-04 09:28:17 -04:00
Dannon Baker f6fc5177b9 Enable attribute hyphenation, now strongly recommended 2021-05-04 09:27:44 -04:00
Dannon Baker bdb85ac473 Eslint version upgrade prior to rule tweak 2021-05-04 09:20:30 -04:00
Matthias Bernt a94b8816f6 Merge branch 'topic/grep-header' of https://github.com/bernt-matthias/galaxy into topic/grep-header 2021-05-04 15:00:19 +02:00
Matthias Bernt a45f06b881 fix test 3 and error detection 
only error for exit code > 1:
 2021-05-04 14:59:23 +02:00
cat-broandMarius van den Beek 4f8503be29 Update lib/galaxy/web/legacy_framework/grids.py 
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
 2021-05-04 22:13:01 +10:00
M BerntandMarius van den Beek 181b862250 Apply suggestions from code review 
- add profile
- add requirement

Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
 2021-05-04 13:47:29 +02:00
Marius van den Beek ef3c7e6615 Merge pull request #11904 from jmchilton/url_for 
Abstraction for fetching qualified app URL across webapp types
 2021-05-04 13:36:02 +02:00
Marius van den Beek 591d9d0b0b Merge pull request #11825 from qiagu/h5_model 
Make datatype h5_model for machine leaning models
 2021-05-04 13:21:40 +02:00
Matthias Bernt 85f643bc66 remove python wrapper for grep tool 
and fix cli (`-n +2`) for head, tail, grep
 2021-05-04 10:49:23 +02:00
cat-bro f4ec1bac83 update legacy_framework.grids.StateColumn: model_class.states is Enum now instead of Bunch 2021-05-04 18:47:24 +10:00
qiagu e57a04f300 Rename to h5mlm 2021-05-04 09:54:42 +02:00
qiagu 4ef23817a3 Peek model representation 2021-05-04 09:54:42 +02:00
qiagu 53e7a2b2bc Add test data 2021-05-04 09:54:42 +02:00
qiagu e13287c091 Make datatype H5_Model for machine leaning models 2021-05-04 09:54:42 +02:00
Marius van den Beek eb3f3c816f Merge pull request #11832 from qiagu/dynamic_options 
Make tool parameter options capable of referring to metadata file
 2021-05-04 09:49:35 +02:00
John Chilton ad6b1ccb8c Merge pull request #11873 from mvdbeek/fix_file_source_uploads 
Fix "Choose remote files" uploads
 2021-05-03 20:54:39 -04:00
Marius van den Beek 21796c3359 Merge pull request #11908 from bernt-matthias/topic/2debugmsg 
improve three debug messages
 2021-05-03 19:53:14 +02:00
John Chilton 88366f7c9d Merge pull request #11918 from mvdbeek/stabilize_history_options_selenium_test 
Stabilize test_history_options selenium test
 2021-05-03 13:49:19 -04:00
Marius van den Beek 9c69ab331e Merge pull request #11877 from jmchilton/rev_mypy 
Rev mypy.
 2021-05-03 19:03:42 +02:00
John Chilton 6241ebc0bf Reduce some duplication around creating WorkRequestContext. 2021-05-03 11:36:44 -04:00
John Chilton c3b7f92b0e Fix url_for branch for actual test case. 2021-05-03 11:36:44 -04:00
John Chilton 7200a3920a Abstraction across app types for fetching qualified URL. 2021-05-03 11:36:44 -04:00
John Chilton 556a0e843d API tests for tool parameter baseurl handling. 2021-05-03 11:36:44 -04:00
John Chilton 43941dedac Test qualified url_for. 2021-05-03 11:36:44 -04:00
mvdbeek 2edb301654 Move shared test setup to lib/galaxy_test/driver/integration_setup.py 2021-05-03 16:18:21 +02:00