Nicola Soranzo
452aba9ee3
Fix remaining issues reported by bugbear; add it to flake8 reqs
2021-01-16 05:58:15 +00:00
Nicola Soranzo
f865e8359f
Deprecate size attribute of <param/> and remove it from tools
...
Also:
- dos2unix test/functional/tools/for_workflows/head.xml
- Single-quote text and data params in `<command/>`
- Remove deprecated `interpreter` attribute of `<command />`
2018-09-10 11:34:37 +01:00
mvdbeek
906951f28e
Single-quote paths in solid_qual_stats and fix test
...
by using sim_size -- we have different float precision between py2 and
py3.
2018-09-05 14:22:01 +02:00
mvdbeek
3fcf1e336d
Fix solid_qual_stats.py
2018-09-05 14:22:00 +02:00
Nicola Soranzo
9b4de72ca6
Fix all E722 errors and ignore E741
...
Introduced in flake8 3.5.0
Fix import order.
2017-10-24 11:29:09 +01:00
Nicola Soranzo
21b44bf348
Fix all E201 and E202 style errors
...
using the following command:
```
autopep8 -i -r --exclude $(sed -e 's|^|./|' -e 's|/$||' .ci/flake8_blacklist.txt | paste -sd,) --select E201,E202 .
```
2017-08-17 11:35:39 +01:00
Nicola Soranzo
1d17a29c79
Fixes for pycodestyle 2.2.0
2016-11-15 16:56:50 +00:00
Nicola Soranzo
11b4f3a60c
Fix import order and Python3 compatibility for tools/
...
xref #1715
2016-09-29 19:26:22 +01:00
Nicola Soranzo
8a43b2b492
Python 3: use "as" instead of comma in except clause
2016-05-17 23:53:16 +01:00
Nicola Soranzo
ed4132d9c0
Python3: Use open() instead of file()
2016-05-17 23:53:16 +01:00
Nicola Soranzo
39da6c3278
Fix the remaining 2180 flake8 errors in tools/ .
2016-02-10 18:46:03 +00:00
Nicola Soranzo
22d4a1d8c3
dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.
2015-05-15 12:40:52 +01:00
Aysam Guerler
9ba585f805
Fix tool tip for compute quality statistics
2013-03-19 12:04:24 -04:00
Jeremy Goecks
9a5679c37c
Use mako template in tool help so that dynamic image paths can be used. Fixes #141
2012-08-07 09:40:51 -04:00
Kanwei Li
2d0b8eb830
Adjust image links in tools to work with a proxy prefix [Brad Chapman]. Fixes #141
2010-12-14 14:22:13 -05:00
Kanwei Li
2f230a0d18
Fix solid_qual_stats tool when value is 0 or not a valid int. Fixes #405
2010-10-26 13:46:03 -04:00
Nate Coraor
7c71894533
Remove obsolete binseq.zip and txtseq.zip formats, and allow for uploading single files in a zip archive. Adapted from a patch from Pablo Cingolani.
2010-06-23 16:48:13 -04:00
Kanwei Li
0952b28502
Sync hashbangs
2010-04-01 20:36:31 -04:00
Kanwei Li
a947686b77
fix some typos for tools in folders N-Z
2009-09-25 02:06:03 -04:00
Anton Nekrutenko
13c7b84abb
Second pass of help and interface updates. Not done yet...
2009-09-22 08:59:36 -04:00
Guruprasad Anada
739e786bc1
Adding qualsolid_boxplot_graph.sh script used by SOLiD quality boxplot tool to the distribution.
2009-09-18 14:21:59 -04:00
Anton Nekrutenko
bf9666bf21
Fixed a stupid and truly horrible paired end splitter bug
2009-08-20 17:33:39 -04:00
Guruprasad Anada
24293166da
MAQ mapping pipeline for SOLiD data
2009-05-13 21:54:45 -04:00
Guruprasad Anada
4f1a6fe60f
Added SOLiD tool section with QC tools.
2009-05-05 22:44:30 -04:00
Nicola Soranzo