Commit Graph
23 Commits
Author SHA1 Message Date
Jeremy Goecks ea8d337316 Add parameter to filtering tool to optionally skip header lines. Add test for new parameter usage as well. 2013-01-29 10:37:16 -05:00
Kanwei Li 34155271b3 [Peter Cock] Filtering tool: Only cast used columns. Fix valid lines and skipped info lines. [Kanwei] Add new testcases to test this behavior. Fixes #537. Fixes #535 2011-05-27 10:47:17 +02:00
Dannon Baker 349d3a07bb First pass standardizing to 'dataaset' from 'query'. 2011-01-27 13:46:20 -05:00
Jeremy Goecks ccf07c72aa Enable filter tool to operate correctly on files with a variable number of columns (such as SAM files). Tool prepares and processes only columns up to and including the right-most column (i.e. column with the largest index) in the filtering condition, and subsequent columns are ignored. New functional test added for this functionality as well. 2010-11-04 16:30:34 -04:00
Greg Von Kuster a14492c491 Added from __future__ import division to the Filter tool and increased the version, and fixed the URL in the new bx_browser tool config. 2010-01-14 11:26:08 -05:00
Kanwei Li a947686b77 fix some typos for tools in folders N-Z 2009-09-25 02:06:03 -04:00
Greg Von Kuster bfabec75a0 Fixes for column_maker and filtering tool to use new approach for handling metadata in the tool params - functional tests should now pass. 2008-07-23 17:12:01 -04:00
Greg Von Kuster 9f46fd2098 Fixes for column maker, columns and column_types tabular metadata elements are now used, no more memory errors. Also corrected some syntax / examples text for filtering tool. 2008-06-09 20:10:14 +00:00
Greg Von Kuster bb4b6c63b1 Improved information in filtering tool. 2008-05-15 12:38:30 +00:00
Greg Von Kuster bb3cd06be1 Extensive fixes for filtering tool, now uses column_types metadata, no more MemoryErrors! 2008-05-09 14:57:19 +00:00
Greg Von Kuster af3b0669aa Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4. 2008-03-28 15:24:50 +00:00
Greg Von Kuster 69a20f0fa7 Corrected old directions on several tools. 2008-03-13 20:46:43 +00:00
Greg Von Kuster 135c9a0377 Removed the remainder of the tool version subdirectories. 2008-03-03 18:38:57 +00:00
Greg Von Kuster 78b2d4b78e Added tool version directories for stats tools directory. 2008-02-22 20:26:57 +00:00
Greg Von Kuster aa0dcc81d5 More functional test cleanup, eliminated redundant tests, unused test data, and renamed some test data files. 2007-10-04 14:14:15 +00:00
Greg Von Kuster b3aa4efa6f Cleaned up functional tests, eliminating some redundant tests and unused test data files. Next step, add many missing tests. 2007-10-03 14:17:41 +00:00
Greg Von Kuster 65aeb6ec40 Better behavior in filter tool if filtering condition includes improper syntax (like commas). 2007-07-13 13:08:36 +00:00
Greg Von Kuster e7b15fa019 Fixes for BioMart and Subtract Query and another example for Filter. 2007-06-18 20:23:50 +00:00
Greg Von Kuster c2d1d0189f Some corrections for tracking referrals. Eliminated the referer column from the event table as it is not needed. 2007-04-10 16:07:53 +00:00
Greg Von Kuster e34fff8ff8 Added a corner-case fix for auto-detect file formats. Updated info displayed to user on upload and filter tools and added more valid words to filter tool. 2007-03-23 17:46:06 +00:00
Greg Von Kuster 0191564e9b Added another example since I noticed several jobs where the user was confused about the "==" requirement. 2007-02-26 20:43:31 +00:00
Greg Von Kuster 67e1bb8846 Enhanced the Filter tool to handle invalid data and to display more useful, informative messages to the user. 2007-02-21 18:41:58 +00:00
James Taylor f788a34fca Moving james-wsgi branch to new trunk. 2006-11-15 16:28:21 +00:00