John Chilton
7bc3afe4ee
Prevent client from sending extra large XLSX files to Galaxy.
2025-06-19 22:56:40 -04:00
John Chilton
472008ee1a
Typo fix from PR review.
2025-06-19 22:56:12 -04:00
John Chilton
b644145d7e
Improved error handling based on PR review.
2025-06-19 22:56:12 -04:00
John Chilton
3db2522609
Move validInput trigger from mounted to created in RuleCollectionBuilder.
2025-06-19 22:55:54 -04:00
John Chilton
3de506375d
Rebuild schema for fetch workbook APIs.
2025-06-19 22:54:56 -04:00
John Chilton
85d634ae9f
Implement fetch workbooks.
2025-06-19 22:54:56 -04:00
John Chilton
dd4f30deca
Package up some of the auto pairing stuff in list wizard for reuse.
2025-06-19 22:54:56 -04:00
John Chilton
99c452d425
Refactor types out of overloaded BuildFileSetWizard component.
2025-06-19 22:54:56 -04:00
John Chilton
4553ca8a28
Drop unused property.
2025-06-19 22:54:56 -04:00
John Chilton
2f1751b799
More readable, reusable mapping target definitions for rule builder.
2025-06-19 22:54:56 -04:00
John Chilton
21da8f3d71
Use help text in column definition dropdown.
2025-06-19 22:54:56 -04:00
John Chilton
06c861fff2
Simple rule builder mapping targets into advanced/simple.
2025-06-19 22:54:56 -04:00
John Chilton
3c70d03fde
Refactor HelpText style for reuse in other context.
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Apply help text styling in rule builder.
2025-06-19 22:54:56 -04:00
John Chilton
cabb3789a2
Bug fix - missing help text in rule builder.
2025-06-19 22:54:55 -04:00
John Chilton
9aee42bc22
Implement hash validation in rule builder.
2025-06-19 22:54:55 -04:00
John Chilton
a776836dba
Update rule builder to allow list:paired_or_unpaired creation.
2025-06-19 22:54:55 -04:00
Ahmed Awan
3000e4343d
Merge branch 'release_25.0' into dev
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# Conflicts:
# lib/galaxy/version.py
# packages/app/HISTORY.rst
# packages/auth/HISTORY.rst
# packages/config/HISTORY.rst
# packages/data/HISTORY.rst
# packages/files/HISTORY.rst
# packages/job_execution/HISTORY.rst
# packages/job_metrics/HISTORY.rst
# packages/meta/HISTORY.rst
# packages/navigation/HISTORY.rst
# packages/objectstore/HISTORY.rst
# packages/schema/HISTORY.rst
# packages/selenium/HISTORY.rst
# packages/test_api/HISTORY.rst
# packages/test_base/HISTORY.rst
# packages/test_driver/HISTORY.rst
# packages/tool_shed/HISTORY.rst
# packages/tool_util/HISTORY.rst
# packages/tours/HISTORY.rst
# packages/util/HISTORY.rst
# packages/web_apps/HISTORY.rst
# packages/web_framework/HISTORY.rst
# packages/web_stack/HISTORY.rst
2025-06-18 12:00:07 -05:00
Ahmed Awan
0d223a99b2
Start work on 25.0.1.dev0
2025-06-18 11:59:57 -05:00
Ahmed Awan
b15565d03e
Create version 25.0.0
2025-06-18 11:59:32 -05:00
davelopez
a74b71b6ed
Allow workflow description to show full text
2025-06-18 10:10:03 +02:00
David López
22b7f14f1a
Merge pull request #20372 from guerler/remove_common_templates
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Install visualizations directly to static path, avoid duplication
2025-06-18 09:42:19 +02:00
Ahmed Awan
0a97c8d580
remove save button from ClickToEdit; add a enter/return key icon instead
2025-06-17 13:40:42 -05:00
Ahmed Awan
ddc01be984
fix selenium selector for adding item to list in multiselect
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It keeps clicking the click to edit somehow, so I had to scope the selector to the hid span.
2025-06-17 13:40:42 -05:00
Ahmed Awan
ede0271056
align the input field for changing identifier better
2025-06-17 13:40:41 -05:00
Ahmed Awan
6849af3ef6
allow rename in workingElements and inListElements
2025-06-17 13:40:41 -05:00
Ahmed Awan
385acddbf8
Follow up to 20442
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https://github.com/galaxyproject/galaxy/pull/20442 contained an unresolved comment for reverting the renaming of elements to the multiselect, and also removing the Rename/Reordering modal entirely. Here are the changes proposed in that comment.
2025-06-17 13:40:41 -05:00
Nate Coraor
ccaa419418
Merge remote-tracking branch 'upstream/release_25.0' into dev
2025-06-17 10:23:03 -04:00
Dannon Baker
72568a72f9
Add click-to-toggle fluid scaling for DatasetAsImage
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Users can now click on images in DatasetView to switch between scaled
and actual size. This helps deal with browser scaling weirdness while
keeping things simple.
2025-06-16 16:34:05 -04:00
Dannon Baker
23d2e0520c
Replaces iframe-based display with DatasetAsImage component for image
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datasets in the preview tab. This provides better image scaling control
and consistent display behavior across browsers, addressing Chrome's
automatic image scaling in iframes.
2025-06-16 11:14:25 -04:00
Marius van den Beek
6dd2a45e74
Merge pull request #20484 from davelopez/merge_25.0_into_dev
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Merge `release_25.0` into `dev`
2025-06-16 15:47:19 +02:00
davelopez
fdac8820a6
Merge release_25.0 into dev
2025-06-16 14:12:30 +02:00
Marius van den Beek
8fb5418bcd
Merge pull request #20480 from mvdbeek/fix_workflow_graph_fit
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[25.0] Don't fit workflow if it doesn't have steps
2025-06-16 13:55:35 +02:00
Marius van den Beek
8b9de36a30
Merge pull request #20246 from guerler/replace_bootstrap_popper
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[25.0] Replace Bootstrap Popover with Popper wrapper
2025-06-16 13:53:11 +02:00
Marius van den Beek
1d8b6247e7
Merge pull request #19900 from ahmedhamidawan/form_data_various_fixes
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[25.0] More fixes to `FormData` drag and drop and typing
2025-06-16 13:47:57 +02:00
mvdbeek
390f25bb18
Fix handling of step.workflow_outputs, which might be undefined
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Fixes https://github.com/galaxyproject/galaxy/issues/20316
2025-06-16 12:07:13 +02:00
mvdbeek
6be802563e
Don't fit workflow if it doesn't have steps
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Fixes https://github.com/galaxyproject/galaxy/issues/19667 and
https://github.com/galaxyproject/galaxy/issues/20242
2025-06-16 11:56:52 +02:00
Marius van den Beek
c71e529cd1
Merge pull request #20468 from mvdbeek/extra_files_path
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[25.0] Add ``/api/datasets/{dataset_id}/extra_files/raw/{filename:path}``
2025-06-16 10:17:31 +02:00
Ahmed Awan
0e7596d496
show loading span for dataset error details view
2025-06-15 20:40:32 -05:00
Ahmed Awan
ee88f52d73
[25.0] Fix dataset error button not using router
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Fixes https://github.com/galaxyproject/galaxy/issues/20471
2025-06-15 20:39:46 -05:00
John Chilton
41fee0a742
Collection API related spelling fix.
2025-06-15 10:14:35 -04:00
mvdbeek
f928b08fa7
Add `/api/datasets/{dataset_id}/extra_files/raw/{filename:path}`
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We need this for the vitessce visualization, that will build urls based
on the path of the current url. In practice, to get the file expected at `obs/.zattrs` the
visualization will build
https://usegalaxy.org/api/datasets/f9cad7b01a4721358531a44ecfb1aff6/display/obs/.zattrs?filename=A/1/bdbd683b-1870-4c11-ae29-b35ff0be59b2.adata.zarr ,
because it reasonably assumes the query parameter is independent of the
path.
With this change we can access the file in question via
https://usegalaxy.org/api/datasets/f9cad7b01a4721358531a44ecfb1aff6/extra_files/raw/A/1/bdbd683b-1870-4c11-ae29-b35ff0be59b2.adata.zarr/obs/.zattrs .
2025-06-15 16:10:49 +02:00
Ahmed Hamid Awan
df51b26889
Merge pull request #20459 from jmchilton/auto_pairing_fix
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[25.0] Fix bug with handling compressed file names while auto-pairing.
2025-06-14 17:31:36 -05:00
John Chilton
5194738cb5
Fix auto pairing for compressed file handling.
2025-06-13 16:59:12 -04:00
John Chilton
5268cb855e
Declarative testing of auto-pairing code.
2025-06-13 16:59:09 -04:00
John Chilton
337678769c
Bug fix: paired_or_unpaired also endswith paired.
2025-06-13 16:46:01 -04:00
Ahmed Hamid Awan
7f7aaba4ab
Merge pull request #20418 from ElectronicBlueberry/g-form-input
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Base Implementation of GFormInput
2025-06-13 15:10:26 -05:00
Marius van den Beek
514c169e0c
Merge pull request #20442 from ahmedhamidawan/list_collection_creator_style_fixes
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[25.0] Fix inconsistent styling in List Collection Builder selector
2025-06-13 21:19:01 +02:00
Marius van den Beek
8e27ecae10
Merge pull request #20457 from davelopez/25.0_update_tiffviewer
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[25.0] Update tiffviewer to latest version supporting more formats
2025-06-13 21:16:57 +02:00
Marius van den Beek
f667ce8d08
Merge pull request #20456 from ahmedhamidawan/fix_remote_file_upload_in_collection
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[25.0] Fix multiple remote file upload to collection creator
2025-06-13 20:37:49 +02:00
davelopez
29c2c11c72
Update TIFF viewer to latest installable version
2025-06-13 20:02:04 +02:00
John Chilton