Marius van den Beek
326bb03e06
Merge pull request #20288 from jmchilton/fetch_workbooks
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Empower Users to More Pragmatically Import Datasets & Collections From Tables
2025-06-20 17:08:24 +02:00
John Chilton
7bc3afe4ee
Prevent client from sending extra large XLSX files to Galaxy.
2025-06-19 22:56:40 -04:00
John Chilton
472008ee1a
Typo fix from PR review.
2025-06-19 22:56:12 -04:00
John Chilton
b644145d7e
Improved error handling based on PR review.
2025-06-19 22:56:12 -04:00
John Chilton
2bee911ce4
Add max length to pydantic models - not sure this makes sense.
2025-06-19 22:55:54 -04:00
John Chilton
3db2522609
Move validInput trigger from mounted to created in RuleCollectionBuilder.
2025-06-19 22:55:54 -04:00
John Chilton
3de506375d
Rebuild schema for fetch workbook APIs.
2025-06-19 22:54:56 -04:00
John Chilton
85d634ae9f
Implement fetch workbooks.
2025-06-19 22:54:56 -04:00
John Chilton
dd4f30deca
Package up some of the auto pairing stuff in list wizard for reuse.
2025-06-19 22:54:56 -04:00
John Chilton
99c452d425
Refactor types out of overloaded BuildFileSetWizard component.
2025-06-19 22:54:56 -04:00
John Chilton
4553ca8a28
Drop unused property.
2025-06-19 22:54:56 -04:00
John Chilton
2f1751b799
More readable, reusable mapping target definitions for rule builder.
2025-06-19 22:54:56 -04:00
John Chilton
21da8f3d71
Use help text in column definition dropdown.
2025-06-19 22:54:56 -04:00
John Chilton
06c861fff2
Simple rule builder mapping targets into advanced/simple.
2025-06-19 22:54:56 -04:00
John Chilton
3c70d03fde
Refactor HelpText style for reuse in other context.
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Apply help text styling in rule builder.
2025-06-19 22:54:56 -04:00
John Chilton
cabb3789a2
Bug fix - missing help text in rule builder.
2025-06-19 22:54:55 -04:00
John Chilton
9aee42bc22
Implement hash validation in rule builder.
2025-06-19 22:54:55 -04:00
John Chilton
7efe923b4c
Sharper exception handling in apply rules test.
2025-06-19 22:54:55 -04:00
John Chilton
05ecc12d96
Test case for rule builder backend errors.
2025-06-19 22:54:55 -04:00
John Chilton
a776836dba
Update rule builder to allow list:paired_or_unpaired creation.
2025-06-19 22:54:55 -04:00
Marius van den Beek
e839cb7cd5
Merge pull request #20509 from jmchilton/input_by_url_to_conversion
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Test case for using URL-based workflow inputs with implicit conversions.
2025-06-19 10:41:11 +02:00
mvdbeek
cafd0c8c62
Merge branch 'release_25.0' into dev
2025-06-19 10:18:46 +02:00
mvdbeek
43feb0efb3
Merge branch 'release_24.2' into release_25.0
2025-06-19 10:17:22 +02:00
Marius van den Beek
044442bdfb
Merge pull request #20511 from mvdbeek/fix_too_strict_validation
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[24.2] Relax validation of XML test assertion parsing
2025-06-19 10:15:16 +02:00
Marius van den Beek
63dcf19fe5
Merge pull request #20518 from bgruening/fix_link_250
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[25.0] Fix link in user release notes
2025-06-19 09:35:49 +02:00
Björn Grüning
af684f2993
fix link in user release notes
2025-06-19 08:33:56 +02:00
John Chilton
9523afb100
Linting fix.
2025-06-18 13:36:05 -04:00
Ahmed Awan
0f9561ec32
Fix package versions
2025-06-18 12:23:14 -05:00
John Chilton
0eeb71e169
Revise assertion relaxation to use better test models.
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This was supposed to be part of https://github.com/galaxyproject/galaxy/pull/19715 but clearly I missed the last mile as always.
2025-06-18 13:22:52 -04:00
Ahmed Awan
3000e4343d
Merge branch 'release_25.0' into dev
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# Conflicts:
# lib/galaxy/version.py
# packages/app/HISTORY.rst
# packages/auth/HISTORY.rst
# packages/config/HISTORY.rst
# packages/data/HISTORY.rst
# packages/files/HISTORY.rst
# packages/job_execution/HISTORY.rst
# packages/job_metrics/HISTORY.rst
# packages/meta/HISTORY.rst
# packages/navigation/HISTORY.rst
# packages/objectstore/HISTORY.rst
# packages/schema/HISTORY.rst
# packages/selenium/HISTORY.rst
# packages/test_api/HISTORY.rst
# packages/test_base/HISTORY.rst
# packages/test_driver/HISTORY.rst
# packages/tool_shed/HISTORY.rst
# packages/tool_util/HISTORY.rst
# packages/tours/HISTORY.rst
# packages/util/HISTORY.rst
# packages/web_apps/HISTORY.rst
# packages/web_framework/HISTORY.rst
# packages/web_stack/HISTORY.rst
2025-06-18 12:00:07 -05:00
Ahmed Awan
0d223a99b2
Start work on 25.0.1.dev0
2025-06-18 11:59:57 -05:00
Ahmed Awan
b15565d03e
Create version 25.0.0
2025-06-18 11:59:32 -05:00
mvdbeek
fdafb0655d
Relax validation of XML test assertion parsing
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when tool source is XML. We can't really encode these attributes as JSON
in XML, and while we could make it work it doesn't feel great to force
tool authors to use such a hypothetical syntax.
I think we still keep all the nice validation here, it's just a little
more lenient.
2025-06-18 18:55:10 +02:00
John Chilton
3190de2a07
Test case for using workflow inputs with implicit conversions.
2025-06-18 11:46:37 -04:00
Marius van den Beek
0d2836aace
Merge pull request #20507 from jdavcs/dev_fix_migrations
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Add a merge migration, revert previous edit
2025-06-18 15:53:31 +02:00
John Davis
a015157789
Add merge migration
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Migrations were added to both branches which resulted in 2 heads on dev
after 25.0 was merged into dev. This merges the two lineages.
2025-06-18 09:43:19 -04:00
John Davis
e82b35602c
Revert "Fix alembic migrations"
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This reverts commit a41a3c93a6
2025-06-18 09:33:11 -04:00
Marius van den Beek
bd4a920c09
Merge pull request #20501 from mvdbeek/fix_migrations
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Fix alembic down_revision for trigger replacement migration
2025-06-18 12:38:16 +02:00
mvdbeek
a41a3c93a6
Fix alembic migrations
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Broken on merging 25.0 into dev
2025-06-18 12:24:23 +02:00
Marius van den Beek
a775e55929
Merge pull request #20500 from davelopez/25.0_allow_expanding_workflow_description
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[25.0] Allow workflow description to show full text
2025-06-18 11:55:05 +02:00
davelopez
a74b71b6ed
Allow workflow description to show full text
2025-06-18 10:10:03 +02:00
David López
22b7f14f1a
Merge pull request #20372 from guerler/remove_common_templates
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Install visualizations directly to static path, avoid duplication
2025-06-18 09:42:19 +02:00
Ahmed Hamid Awan
292aecae16
Merge pull request #20386 from ahmedhamidawan/25.0_release_notes
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[25.0] Release notes
2025-06-17 15:31:13 -05:00
Ahmed Awan
404e34ce42
fix natalie's github username
2025-06-17 15:30:48 -05:00
Ahmed Hamid Awan and José Manuel Domínguez
bcac9bcc10
Update doc/source/releases/25.0_announce.rst
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Co-authored-by: José Manuel Domínguez <43052541+kysrpex@users.noreply.github.com >
2025-06-17 15:18:16 -05:00
Ahmed Awan
7be1f9e3bd
remove developer section
2025-06-17 15:17:47 -05:00
Ahmed Awan
9f34683d11
add final PRs to release notes
2025-06-17 15:16:12 -05:00
Ahmed Awan
f364304e7e
replace youtube video with latest one for preferred viz display
2025-06-17 14:52:08 -05:00
Ahmed Awan
f16f4e67ed
add latest PRs 06/12
2025-06-17 14:52:08 -05:00
Ahmed Awan
95834d14a4
add communications section
2025-06-17 14:52:08 -05:00
Marius van den Beek