 Aysam Guerler
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2efea0a048
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Ui: Adjust styles
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2015-02-13 15:00:23 -05:00 |
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Dannon Baker
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280e5c4e9e
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Mask password from connection log in queue worker.
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2015-02-13 14:15:22 -05:00 |
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Carl Eberhard
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3d2c2ab913
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UI, multi-history: move styles from mako to less
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2015-02-13 14:00:42 -05:00 |
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Dannon Baker
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638f9cdff2
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Add utility method for masking passwords from urls.
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2015-02-13 13:05:24 -05:00 |
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Dannon Baker
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2559379dad
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Cleanup in util.
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2015-02-13 09:39:49 -05:00 |
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Aysam Guerler
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574a4a4192
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ColorPicker: Use fade out
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2015-02-12 21:15:03 -05:00 |
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Aysam Guerler
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8d85b184d7
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ColorPicker: Hide on selection
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2015-02-12 21:12:13 -05:00 |
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Aysam Guerler
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b7a6cd9c10
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ColorPicker: Use lower case values
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2015-02-12 20:42:56 -05:00 |
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Aysam Guerler
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dcd7764db1
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ColorPicker: Fix event handler
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2015-02-12 20:11:11 -05:00 |
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Aysam Guerler
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327580cb35
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Ui: Add default color
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2015-02-12 20:02:59 -05:00 |
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Aysam Guerler
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c36283a623
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Change color
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2015-02-12 19:46:08 -05:00 |
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Aysam Guerler
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d43b1ed0c2
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Ui: Add simple color picker
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2015-02-12 19:24:56 -05:00 |
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Carl Eberhard
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bb2cef9790
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UI, history multi-view: fix size sorting, add more orders, rework UI for orders
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2015-02-12 17:51:45 -05:00 |
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Martin Cech
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bedf599779
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fix for 'add datasets to folder' button in data libraries
when no library import configuration is set;
thanks to Carl for reporting this
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2015-02-12 16:09:18 -05:00 |
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Nate Coraor
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1d16ebbe9b
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Rename the egg env vars back to GALAXY_* now that they are not config file options anymore.
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2015-02-12 15:42:50 -05:00 |
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Carl Eberhard
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b589725907
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Merge
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2015-02-12 15:35:47 -05:00 |
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Carl Eberhard
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8bf5a5b38d
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Core: move handlebars load before require (stackoverflow.com/questions/15371918); minor clean up
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2015-02-12 15:35:24 -05:00 |
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Nate Coraor
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47a1c7752e
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Pass the egg env variables onto jobs.
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2015-02-12 15:35:19 -05:00 |
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Nate Coraor
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e64ab4c85c
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There's no reliable way to use the Galaxy config file to control egg use/fetching since so many things use galaxy.eggs from outside of Galaxy, so drop the support for the config file options and rely on the environment variables only. Reverse the defaults so that eggs and fetching are enabled by default. I'll make sure that they properly get passed to the tool execution environments in the next commit.
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2015-02-12 15:10:19 -05:00 |
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Dannon Baker
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c45710da57
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Update original parse_xml function with Carl's fix. It's safe, and I know I saw that same doctype deprecation somewhere else, might as well share it.
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2015-02-12 14:56:33 -05:00 |
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Carl Eberhard
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5029a819d5
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Visualizations registry: remove ElementTree doctype deprecation warning
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2015-02-12 14:47:45 -05:00 |
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Nate Coraor
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1e07117791
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Place the new egg config options into the environment at Galaxy startup since
eggs.require() has no access to the config file.
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2015-02-12 14:27:37 -05:00 |
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Dannon Baker
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6ff8aa97f7
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Merge from stable.
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2015-02-12 13:40:22 -05:00 |
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Nate Coraor
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212b1f9cb9
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Merged in dannon/galaxy-central/stable (pull request #668)
[STABLE] Egg-fetching related bugfixes grafted from default.
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2015-02-12 13:20:29 -05:00 |
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Nate Coraor
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de6a45cc05
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So, you can put module source URLs right into a requirements.txt. Thanks John (and thanks for nothing, pip documentation).
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2015-02-12 13:18:15 -05:00 |
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Carl Eberhard
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03845f5ef3
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UI, history multi-view: move copy and delete into submenu
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2015-02-12 13:07:31 -05:00 |
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Nate Coraor
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c051625a1c
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Require Whoosh<2.5 as per Martin.
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2015-02-12 12:39:27 -05:00 |
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Nate Coraor
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0c8cb50c1d
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Use GALAXY_CONFIG_ environment variables instead of GALAXY_ to fall in line with convention.
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2015-02-12 12:31:58 -05:00 |
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Nate Coraor
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49cc443b81
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Make it possible to disable egg fetching or the use of eggs entirely and provide a requirements.txt.
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2015-02-12 12:13:24 -05:00 |
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Nate Coraor
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92f6ace47f
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Ensure the correct default Galaxy config file is found in common_startup.sh, it
makes a difference for egg fetching since some eggs are conditional based on
config.
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2015-02-12 11:47:58 -05:00 |
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Martin Cech
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082ff4d493
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Merged in dan/galaxy-central-prs/stable (pull request #667)
[STABLE] Fixes for resetting metadata on ToolShed Repositories.
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2015-02-12 11:42:29 -05:00 |
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Carl Eberhard
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48fc8fddea
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Merge
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2015-02-12 11:18:40 -05:00 |
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Carl Eberhard
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286bf397d3
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UI, history multi-view: render and keep drag help text on current histry as an affordance for drag-to-copy
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2015-02-12 11:18:21 -05:00 |
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Aysam Guerler
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66f7303ba8
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ToolForm: Separate tool parameters from sections
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2015-02-12 11:10:14 -05:00 |
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Dannon Baker
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fd500d7493
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Fix path insertion vs appending of <galaxy>/lib for unit tests.
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2015-02-12 10:37:44 -05:00 |
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Dannon Baker
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a165e1d9b6
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Fix path insertion vs appending of <galaxy>/lib for galaxy/main.py.
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2015-02-12 10:36:10 -05:00 |
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Dannon Baker
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3961d4834f
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Fix path insertion vs appending of <galaxy>/lib for all scripts.
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2015-02-12 10:34:51 -05:00 |
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Dannon Baker
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c733ce370b
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Fix path insertion vs appending of <galaxy>/lib for all scripts.
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2015-02-12 10:34:51 -05:00 |
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Carl Eberhard
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eea2a8a346
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UI, history multi-view: simplify header UI, label current history, some clean up
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2015-02-12 10:06:37 -05:00 |
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Nate Coraor
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669bdd4dc2
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Update tag latest_2015.01.13 for changeset 577b270034b4
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2015-02-12 09:00:26 -05:00 |
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Dannon Baker
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dce9c1a521
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Fix path manipulation during fetch_eggs. This getting an external version of pkg_resources (and not ours in lib/) is what is causing the weird egg fetching errors. Newer versions of pkg_resources create a mangled distribution string for some eggs with nonstandard version identifiers.
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2015-02-12 08:28:37 -05:00 |
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Dannon Baker
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de1cd01954
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Fix path manipulation during fetch_eggs. This getting an external version of pkg_resources (and not ours in lib/) is what is causing the weird egg fetching errors. Newer versions of pkg_resources create a mangled distribution string for some eggs with nonstandard version identifiers.
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2015-02-12 08:28:37 -05:00 |
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Dannon Baker
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58e9b20965
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Fix at least one error with zipfile downloads and file permissions not being set correctly.
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2015-02-12 07:57:51 -05:00 |
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Dannon Baker
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6a46ea7d50
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Fix at least one error with zipfile downloads and file permissions not being set correctly.
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2015-02-12 07:57:51 -05:00 |
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Dannon Baker
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2822b64d3e
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pep8 in eggs module while trying to fix eggnotfetchable bugs
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2015-02-12 07:55:52 -05:00 |
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Aysam Guerler
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bbc750881e
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Ui: Drilldown remove unnecessary index
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2015-02-12 00:56:29 -05:00 |
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Aysam Guerler
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43878c2fff
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Ui: Drilldown fix state expansion
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2015-02-11 22:41:03 -05:00 |
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Aysam Guerler
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8bc22ecd91
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Ui: Drilldown simplify state expansion
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2015-02-11 22:04:53 -05:00 |
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Aysam Guerler
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9cdf570585
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Ui: Drilldown set initial expand states
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2015-02-11 21:58:08 -05:00 |
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Aysam Guerler
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3ffcc2448c
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Charts: Fix error message
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2015-02-11 20:56:10 -05:00 |
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