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Author SHA1 Message Date
John Chilton 217b78fd5b Merge pull request #9344 from nsoranzo/default_python3_venv 
Create Python3 virtualenv by default
 2020-02-10 09:12:14 -05:00
John Chilton cf7d449c89 Merge pull request #9332 from guerler/workflow_editor_node 
Replacing Workflow Editor Node with Vue-component
 2020-02-10 09:08:05 -05:00
Björn Grüning d5405585fe Merge pull request #9273 from guerler/list_icons 
Add icons to dropdowns in dataset and workflow list
 2020-02-09 21:20:40 +01:00
guerler 566f6c6feb Merge branch 'dev' into list_icons 2020-02-09 12:12:32 -05:00
Nicola Soranzo e209777066 Python3: decode the output of `subprocess.check_output()` 2020-02-09 16:03:28 +00:00
guerler ea84cbb59b Add missing clearfix to workflow node wrapper 2020-02-08 22:53:04 -05:00
Nicola Soranzo 437f51c2a6 Create Python3 virtualenv by default 
- Allow specifying Python to use to create virtualenv using GALAXY_PYTHON
  environment variable.
- Integrate Python support docs from https://galaxyproject.org/admin/python/
- Update virtualenv installation to use v16.7.9
 2020-02-09 02:54:24 +00:00
guerler 8c129c19d3 Replace backbone cid attribute by counter 2020-02-08 21:06:57 -05:00
Dannon Baker 226ae08597 Merge remote-tracking branch 'upstream/release_20.01' into dev 2020-02-07 09:07:11 -05:00
Dannon 6ebb796c56 Merge pull request #9334 from nsoranzo/release_20.01_doc_fixes 
[20.01] Various doc fixes
 2020-02-07 09:06:12 -05:00
Nicola Soranzo 81d20839f5 Merge branch 'release_20.01' into dev 2020-02-07 03:02:30 +00:00
Nicola Soranzo 77d8dac19a Various doc fixes 
- Merge invisible `doc/source/admin/reports.md` into
  `doc/source/admin/reports.rst`
- Misc fixes and cleanups
 2020-02-07 02:37:57 +00:00
guerler 990b093fae Remove unused backbone dependency from workflow view 2020-02-06 21:36:06 -05:00
guerler e82a4707a5 Fix qunit test cases 2020-02-06 21:07:13 -05:00
guerler 13fb85058d Remove unused legacy function from workflow view 2020-02-06 20:52:17 -05:00
guerler d1ad0eb56d Remove backbone dependency from workflow node wrapper 2020-02-06 20:36:39 -05:00
guerler 9d62c3d101 Fix element selector in workflow node view 2020-02-06 20:26:09 -05:00
guerler 7356729f94 Remove backbone dependency from workflow data views 2020-02-06 20:23:01 -05:00
guerler 846053ceba Remove backbone dependency from node view helper 2020-02-06 20:08:46 -05:00
guerler 9d9c386065 Move content related dom changes from workflow manager to node level 2020-02-06 18:33:05 -05:00
guerler b2c938a1d1 Remove spacing in workflow node title 2020-02-06 18:14:54 -05:00
guerler b80e0783fa Account for floating-options, restore loading message 2020-02-06 16:32:35 -05:00
guerler cf126dd563 Restore workflow node button functions 2020-02-06 16:32:35 -05:00
guerler 12348fb25a Fix comments, format client 2020-02-06 16:32:35 -05:00
guerler 8c35421bb0 Remove legacy workflow node templating artifacts 2020-02-06 16:32:35 -05:00
guerler 68a8e62be6 Move node buttons to workflow node component 2020-02-06 16:32:35 -05:00
guerler 5e33af5ae7 Insert component mounting into workflow node building process 2020-02-06 16:32:35 -05:00
Dannon fddc34d9cc Merge pull request #9315 from mvdbeek/fix_workflow_save_as_2 
[20.01] Fix workflow editor save as functionality
 2020-02-06 14:50:57 -05:00
Dannon 373549bc5b Merge pull request #9330 from natefoo/containers-py3-fix 
[20.01] Fix use of next() as a meethod instead of a function
 2020-02-06 12:48:44 -05:00
Nate Coraor bc339be5ca Fix use of next() as a meethod instead of a function 2020-02-06 12:37:36 -05:00
Marius van den Beek a69c77219f Merge pull request #9329 from natefoo/containers-py3-fix 
[20.01] Fix Python 3 error in containers lib
 2020-02-06 18:12:40 +01:00
Nate Coraor b6077e7969 Don't mutate generator 2020-02-06 11:59:55 -05:00
Enis Afgan e438ae99c5 Merge pull request #9322 from nuwang/fix_k8s_slots 
Use requests for slots instead of limit
 2020-02-06 11:17:03 -05:00
Dannon af153b91de Merge pull request #9327 from mvdbeek/fix_string_module_use 
[20.01] Fix string module use
 2020-02-06 11:08:31 -05:00
Marius van den BeekandNicola Soranzo c6bbd49ec7 Update lib/galaxy/visualization/plugins/interactive_environments.py 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2020-02-06 16:34:22 +01:00
Marius van den BeekandSergey Golitsynskiy 61bdd76f35 Update tools/plotting/bar_chart.py 
Co-Authored-By: Sergey Golitsynskiy <sgolitsynskiy@gmail.com>
 2020-02-06 16:28:52 +01:00
Marius van den BeekandNicola Soranzo 172751676d fix string splitting 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2020-02-06 16:26:14 +01:00
mvdbeek 2fe556959d Fix string module use 2020-02-06 16:18:28 +01:00
John Chilton a509470eed Merge pull request #9324 from guerler/workflow_editor 
Use Bootstrap components to build the Workflow Editor Toolbar
 2020-02-06 10:05:31 -05:00
Nicola Soranzo 2672c60c63 Merge branch 'release_20.01' into dev 2020-02-06 11:11:25 +00:00
Nicola Soranzo 57cc19eeff Merge pull request #9321 from dannon/fix-reports-disk-usage 
[20.01] Fix reports disk usage query for python 3
 2020-02-06 09:31:50 +00:00
guerler b66a2ce74d Adjust selenium tests 2020-02-05 18:16:21 -05:00
guerler 54404c91b3 Make sure that dropdown has a higher z-index then active tool form in canvas 2020-02-05 15:50:52 -05:00
guerler cb6ca5c22b Replace custom toolbar in workflow editor with bootstrap vue components 2020-02-05 15:33:37 -05:00
Nuwan Goonasekera 58715ba73d Use requests for slots instead of limit 2020-02-06 00:22:59 +05:30
Dannon b703548d5d Merge pull request #9316 from mvdbeek/fix_and_enhance_reports 
[20.01] Various fixes and enhancements to reports
 2020-02-05 13:48:33 -05:00
guerler 84601bb994 Format client, remove spacing 2020-02-05 13:42:53 -05:00
guerler 1c71016acf Use boolean instead of string to switch between workflow editor options 2020-02-05 13:40:23 -05:00
DannonandNicola Soranzo 0459e0c1e3 Apply suggestions from code review 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2020-02-05 13:16:10 -05:00
Nicola Soranzo 675163eafb Merge pull request #9293 from mvdbeek/tabular.gz 
[20.01] Allow tabular.gz / add embl to uploadable formats
 2020-02-05 18:14:59 +00:00