accidental files
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migrate ITs from EU
accidental files
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migrate ITs from EU
accidental files
more files
migrate ITs from EU
accidental files
more files
Fixes https://sentry.galaxyproject.org/sentry/main/issues/501741/:
```
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xd7 in position 77: invalid continuation byte
File "galaxy/web/framework/middleware/sentry.py", line 43, in __call__
iterable = self.application(environ, start_response)
File "/cvmfs/main.galaxyproject.org/venv/lib/python3.6/site-packages/paste/recursive.py", line 85, in __call__
return self.application(environ, start_response)
File "galaxy/web/framework/middleware/statsd.py", line 34, in __call__
req = self.application(environ, start_response)
File "/cvmfs/main.galaxyproject.org/venv/lib/python3.6/site-packages/paste/httpexceptions.py", line 640, in __call__
return self.application(environ, start_response)
File "galaxy/web/framework/base.py", line 143, in __call__
return self.handle_request(environ, start_response)
File "galaxy/web/framework/base.py", line 222, in handle_request
body = method(trans, **kwargs)
File "galaxy/web/framework/decorators.py", line 57, in call_and_format
rval = func(self, trans, *args, **kwargs)
File "galaxy/webapps/galaxy/api/genomes.py", line 41, in show
region = self.app.genomes.reference(trans, dbkey=id, chrom=chrom, low=low, high=high)
File "galaxy/visualization/genomes.py", line 395, in reference
twobit = TwoBitFile(open(twobit_file_name))
File "bx/seq/twobit.py", line 56, in __init__
strng = file.read(TWOBIT_MAGIC_SIZE)
File "python3.6/codecs.py", line 321, in decode
(result, consumed) = self._buffer_decode(data, self.errors, final)
```
By default it's a bytestring.
Also:
- don't use `shell=True`
- add a `splitlines()` forgotten in commit 670897ec5c
- raise exception instead of returning `error_info` in `docker_to_singularity()`
- use a random temp dir in `singularity_container_test()`
Anthony Bretaudeau