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1f62be4e1aec00a82b4c66209d486ebda695554a
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26 Commits
Author SHA1 Message Date
Dannon Baker 66ef2fc90e Merge over and resolve conflicts release->dev 2015-04-22 10:08:53 -04:00
Daniel Blankenberg 64fb5d15c1 Fix for GenomeSpace Exporter no longer allowing filenames to contain slashes. 2015-04-20 10:17:31 -04:00
Daniel Blankenberg 153bef1c52 Enable multi-part upload for the GenomeSpace export tool. Files greater than 5gb can once again be send to GenomeSpace from Galaxy. 
(cherry picked from commit 126ae073af)
 2015-04-16 09:48:42 -04:00
Daniel Blankenberg a25c5c025a Some basic Caching for the GenomeSpace Export Tool's list of available target directories, so we don't have to reload and download everything every time, especially now that we are calling the parameter's get options method 5 times (6 on reload) when a user loads the tool interface. For now, we'll use 30 seconds as the cache valid time length. 
(cherry picked from commit feb0a26f8d)
 2015-04-16 09:48:35 -04:00
Daniel Blankenberg 126ae073af Enable multi-part upload for the GenomeSpace export tool. Files greater than 5gb can once again be send to GenomeSpace from Galaxy. 2015-04-02 13:49:36 -04:00
Daniel Blankenberg feb0a26f8d Some basic Caching for the GenomeSpace Export Tool's list of available target directories, so we don't have to reload and download everything every time, especially now that we are calling the parameter's get options method 5 times (6 on reload) when a user loads the tool interface. For now, we'll use 30 seconds as the cache valid time length. 2015-03-17 13:08:06 -04:00
Daniel Blankenberg 4fdfc45156 Fixes for genomespace exporter recieving UnvalidatedValue objects. 2014-05-19 10:17:36 -04:00
Daniel Blankenberg 4d88ce03de Improve handling of invalid/expired GenomeSpace tokens in GenomeSpace export tool. 2014-04-09 17:24:56 -04:00
Daniel Blankenberg 745fa11661 Update GenomeSpace exporter directory listing to send the now working/required accept string. 2014-03-13 17:07:23 -04:00
Daniel Blankenberg 040fb029f8 Update GenomeSpace import tools to use current working directory instead of __new_file_path__ for extrafiles created using multiple outputs technique. Should resolve issue on our public servers where only the first selected file was being imported to the history. 2014-02-05 13:44:32 -05:00
Dannon Baker a40457ab09 Merge. 2014-01-10 07:40:02 -05:00
Dannon Baker 559ecb4ec8 Remove dependency on simplejson; convert everything over to using the json module in the python standard library. 2014-01-10 07:29:05 -05:00
Daniel Blankenberg 04cb164c1f Special case genomespace file browser import tool's handling of GenomeSpace format identifier 'http://www.genomespace.org/datamanager/dataformat/unknown' to cause datatype auto-dection via sniff with a fallback to using filename extention. 2014-01-09 10:54:58 -05:00
Daniel Blankenberg e25140647f Fix for GenomeSpace Export root directory listing. 2013-06-20 16:24:33 -04:00
Daniel Blankenberg 14cec88abc Update GenomeSpace tools to use __user__ as needed. 2013-05-03 16:02:40 -04:00
Daniel Blankenberg 167a334665 Display error to user when genomespace file browser tool is used with no imported datasets. 2013-05-02 15:46:06 -04:00
Daniel Blankenberg 508b5f3f36 Update GenomeSpace serverurl.properties file location. Should resolve network issues experienced with Jumbo Frames and the Broad. 2013-04-30 17:19:11 -04:00
Daniel Blankenberg 839a5744e5 When listing GenomeSpace directories in GenomeSpace export tool, if an API-discovered URL is invalid, skip gracefully. 2013-01-02 15:25:28 -05:00
Daniel Blankenberg 2c7f2c7106 Enhance GenomeSpace filebrowser importer to display a better history item name for additional primary datasets. 2012-10-24 12:33:34 -04:00
Daniel Blankenberg 43dafa165f Enhance GenomeSpace import tool to display a better history item name for additional primary datasets. 2012-10-24 12:33:34 -04:00
Daniel Blankenberg a986bcde0e Minor enhancements for GenomeSpace import naming of secondary files. 2012-10-19 15:26:51 -04:00
Daniel Blankenberg 14734e345a Update GenomeSpace exporter tool to use the newly introduced /personaldirectory as the root for auto-generated export paths. 2012-05-04 14:31:22 -04:00
Daniel Blankenberg 26e75b3e60 Allow GenomeSpace importer tool to sniff filetype when GSMetadata object is not available. 2012-05-03 12:25:06 -04:00
Daniel Blankenberg 8163333bdb Slightly more unique automatically generated filename for GenomeSpace export. 2012-04-18 19:38:34 -04:00
Daniel Blankenberg 9894c0bd9a Small fix for setting upload path in GenomeSpace export tool. 2012-03-30 17:08:35 -04:00
Daniel Blankenberg 195e08f2b1 Add GenomeSpace tools. 2012-03-29 10:24:28 -04:00