opensource/galaxy
3
0
Fork 0
mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-24 16:30:27 +08:00
Code Issues Packages Projects Releases Wiki Activity

Enhance GenomeSpace filebrowser importer to display a better history item name for additional primary datasets.

Browse Source
This commit is contained in:
Daniel Blankenberg
2012-10-24 12:33:34 -04:00
parent 43dafa165f
commit 2c7f2c7106
1 changed files with 6 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files
tools/genomespace/genomespace_file_browser.py
+6
View File
@@ -140,11 +140,17 @@ def download_from_genomespace_file_browser( json_parameter_file, genomespace_sit
if not filename:
filename = download_url
if output_filename is None:
original_filename = filename
filename = ''.join( c in VALID_CHARS and c or '-' for c in filename )
while filename in used_filenames:
filename = "-%s" % filename
used_filenames.append( filename )
output_filename = os.path.join( datasource_params['__new_file_path__'], 'primary_%i_%s_visible_%s' % ( hda_id, filename, galaxy_ext ) )
metadata_parameter_file.write( "%s\n" % simplejson.dumps( dict( type = 'new_primary_dataset',
base_dataset_id = dataset_id,
ext = galaxy_ext,
filename = output_filename,
name = "GenomeSpace import on %s" % ( original_filename ) ) ) )
else:
if dataset_id is not None:
metadata_parameter_file.write( "%s\n" % simplejson.dumps( dict( type = 'dataset',