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Author SHA1 Message Date
Dannon Baker 1583eecfdb Client formatting sync for 19.01 2019-02-26 11:14:36 -05:00
Dannon Baker 14f3ce3b50 Fix workflow interface drop to import 2019-02-26 11:12:22 -05:00
Martin Cech bd25ff919c Merge pull request #7414 from mvdbeek/fix_analyze_75 
[19.01] Fix analyze 75 datatype upload
 2019-02-26 10:40:01 -05:00
mvdbeek ed375993eb Fix analyze75 hdr file upload when convert newlines is on 2019-02-26 12:22:46 +01:00
mvdbeek 47ed81feb9 Remove unreachable print statement 
I don't think an exception could ever occur here.
 2019-02-26 12:06:07 +01:00
Nate Coraor 808aa5bef7 Merge remote-tracking branch 'upstream/release_18.09' into release_19.01 2019-02-22 13:23:16 -05:00
Nicola Soranzo 9b72f5a880 Merge pull request #7216 from mvdbeek/fix_galaxy_yml_prefix_comments 
[18.09] Update configuration samples
 2019-02-22 18:16:25 +00:00
John Chilton 8651e1eea3 Merge branch 'release_18.09' into release_19.01 2019-02-22 13:12:16 -05:00
John Chilton 2f973ac7fa Merge branch 'release_18.05' into release_18.09 2019-02-22 13:11:49 -05:00
John Chilton 1529758ecb Merge branch 'release_18.01' into release_18.05 2019-02-22 13:11:19 -05:00
John Chilton 656b3c2f87 Refactor dataset fetching in get/set dataset method in web controller. 2019-02-22 13:10:12 -05:00
Marius van den Beek 5fc5b4aaab Merge pull request #12 from natefoo/mvdbeek-fix_galaxy_yml_prefix_comments 
Slight rewording of the cookie_path option description, and corrections to file_path and new_file_path descriptions
 2019-02-22 17:41:24 +01:00
Nate Coraor a83eb67775 Slight rewording of the cookie_path option description, and corrections 
to file_path and new_file_path descriptions.
 2019-02-22 11:31:44 -05:00
Nicola Soranzo 351c188830 Remove `filter-with and update cookie_path` options also for Tool Shed and Reports 2019-02-22 12:07:16 +00:00
Martin Cech 1a0f067590 change config schema to reflect removing paste options 2019-02-21 12:26:31 -05:00
Martin Cech 4ad4fe59be Merge pull request #7399 from dannon/bump_yarn_network_tolerance 
[19.01] Bump yarn network tolerance
 2019-02-21 11:57:49 -05:00
Dannon Baker 726ad9a0f6 Bump yarn's network timeout from 2 minutes to 5 minutes. 2019-02-21 11:48:11 -05:00
mvdbeek 8c9c27b7f6 Drop filter-with from docs / .sample 2019-02-21 17:45:56 +01:00
Martin Cech 648d01685b Merge pull request #7390 from mvdbeek/more_useful_error_message 
[19.01] Report line number mismatch in sort collection tool
 2019-02-20 12:12:27 -05:00
Martin Cech 015ce5cedc Merge pull request #7308 from jmchilton/19.01_release_notes 
[19.01] Release notes for 19.01.
 2019-02-20 11:52:47 -05:00
mvdbeek b4fc7c19a8 Report line number mismatch in sort collection tool 
Otherwise this would just fail because sorted_elements is undefined.
I don't think there can be a HDA without metadata, so I've dropped
that check.
 2019-02-20 13:53:26 +01:00
Martin Cech ac9b300df6 Merge pull request #7385 from blankenberg/19.01-anvio-datatypes 
[19.01] Add datatypes for Anvi'o
 2019-02-19 10:55:16 -05:00
Marius van den Beek 6d24026ba5 Merge pull request #11 from martenson/fix_galaxy_yml_prefix_comments 
remove Paste config option, reword URL prefix
 2019-02-19 16:42:06 +01:00
Martin Cech d72f82de98 remove Paste config option, reword URL prefix 2019-02-19 10:37:34 -05:00
Björn Grüning 35529a05fb Merge pull request #7384 from jmchilton/fix_h5_assertion_docs 
[19.01] Fix HDF5 test assert docs
 2019-02-19 13:28:58 +01:00
Nicola Soranzo 737bae8f9b Reword HDF5 attribute test docs 2019-02-19 00:43:12 +00:00
Daniel Blankenberg 51280fbf7d flip a line 2019-02-18 15:26:31 -05:00
Daniel Blankenberg cf31e330e8 Decrease readability. 2019-02-18 14:25:19 -05:00
Daniel Blankenberg 948cdb251a cleanup anvio.py 2019-02-18 13:53:03 -05:00
Daniel Blankenberg 7abd448cbe Add datatypes for Anvi'o 2019-02-18 13:48:13 -05:00
John Chilton 2033535976 Fix HDF5 test assert docs 
Alternative to https://github.com/galaxyproject/galaxy/pull/7382, fix documentation without giving up better validation one gets with actual types for assertion XML elements.
 2019-02-18 13:09:12 -05:00
Nicola Soranzo 37a93972d5 Fix PR link 2019-02-18 13:36:45 +00:00
Nicola Soranzo ca4acf78df Sort PR numbers 
Small fixes.
 2019-02-18 13:29:42 +00:00
John Chilton 94bcb8d00f More fixes to 19.01 release notes. 2019-02-18 08:01:50 -05:00
John Chilton 2a3555d9d7 Better Singularity summary thanks to @mvdbeek. 2019-02-18 07:52:09 -05:00
Marius van den Beekandjmchilton 072b8d73ec Update doc/source/releases/19.01.rst 
Co-Authored-By: jmchilton <jmchilton@gmail.com>
 2019-02-18 07:47:35 -05:00
Marius van den Beekandjmchilton 16af73423f Update doc/source/releases/19.01.rst 
Co-Authored-By: jmchilton <jmchilton@gmail.com>
 2019-02-18 07:47:28 -05:00
Dannon b67dc2ba24 Merge pull request #7353 from bgruening/improve_err_message 
Improve error message during tool testing
 2019-02-14 16:56:14 -05:00
John Chilton 728ff2075d Merge pull request #7352 from bgruening/test_data_fix 
fix the filename of saved test-data
 2019-02-14 13:57:44 -05:00
John Chilton 45d06acbc8 Merge pull request #7354 from dannon/comm_server_fixes 
[19.01] Communication Server Display Fixes
 2019-02-13 17:40:20 -05:00
John Chilton 62d8d808eb Merge pull request #7331 from mvdbeek/test_data_managers 
[19.01] Discriminate data managers and allow managed testing
 2019-02-13 14:25:41 -05:00
Dannon Baker b29b8b5c17 Use standard bootstrap classes for sizing here since it's only used in one spot. 2019-02-12 16:43:05 -05:00
Dannon Baker bfeb272757 drop redundant communication server frame styles. 2019-02-12 16:43:05 -05:00
Dannon Baker f3208503f6 Drop 'fade in' classes on iframe; prefer static display without extra animations and fixes opacity issue from biostar. 2019-02-12 16:43:05 -05:00
Bjoern Gruening f311ebd1e2 mention planemo explicitly 2019-02-12 22:28:32 +01:00
Bjoern Gruening 740fc8594e improve test error message 2019-02-12 22:22:43 +01:00
Bjoern Gruening 06d1e5a8b2 fix the name of presevered test-data 2019-02-12 21:12:02 +01:00
Nicola Soranzo b33b06440f Merge branch 'release_18.09' into release_19.01 2019-02-12 11:51:07 +00:00
Martin Cech 9c9c8a5d50 Merge pull request #7239 from dannon/node_ver_pin_18.09 
[18.09] Add/pin configurable node version
 2019-02-11 21:28:46 -05:00
Björn Grüning f7322d85a3 Merge pull request #7299 from chambm/feature/rawtar-datatypes 
Add datatypes and sniffers for tar archives of directory-based MS formats and WIFF/SCAN pairs
 2019-02-09 14:42:28 +01:00