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Author SHA1 Message Date
Nicola Soranzo 132ea2b1bf Merge pull request #18296 from mvdbeek/untangle_shed_from_driver_util 
[24.0] Move tool shed specific driver function to tool_shed.test
 2024-06-01 18:26:39 +01:00
mvdbeek 0d64837577 Fix global variable 2024-05-31 19:56:54 +02:00
mvdbeek e2f4043324 Pass init_fast_app in launch_server function 2024-05-31 19:53:11 +02:00
Marius van den Beek 10f9b3a4f6 Merge pull request #18283 from davelopez/24.0_fix_feature_location_index_data_provider 
[24.0] Check various preconditions in FeatureLocationIndexDataProvider
 2024-05-31 19:15:52 +02:00
Marius van den Beek 6901b1f359 Merge pull request #18286 from davelopez/24.0_fix_imported_history_link_for_anonymous 
[24.0] Redirect anonymous users to home when importing public histories
 2024-05-31 19:15:35 +02:00
Marius van den Beek 062371585a Merge pull request #18289 from davelopez/24.0_fix_copy_modal_login_link 
[24.0] Use correct link for log in or register in Copy Modal
 2024-05-31 19:06:42 +02:00
mvdbeek a8ac6fd7ca Move tool shed specific driver function to tool_shed.test 
Should fix https://github.com/galaxyproject/galaxy/issues/18282
 2024-05-31 19:00:45 +02:00
Marius van den Beek 268aa814e2 Merge pull request #18294 from jdavcs/240_ts_db_revision_tags 
[24.0] Add TS db revision tags for 24.0
 2024-05-31 18:42:30 +02:00
John Davis 6c998adeac Add TS db revision tags for 24.0 2024-05-31 12:39:40 -04:00
John Davis 29cd573d93 Merge release_23.2 into release_24.0 2024-05-31 12:35:02 -04:00
Marius van den Beek 192fbde15f Merge pull request #18293 from jdavcs/232_ts_db_revision_tags 
[23.2] Add toolshed database revision tags for 23.2
 2024-05-31 18:33:32 +02:00
John Davis 579884db75 Add TS db revision tags for 23.2 2024-05-31 12:25:40 -04:00
John Davis 7a9148bf02 Merge release_23.1 into release_23.2 2024-05-31 12:19:52 -04:00
davelopez 234933b6a9 Use correct link for log in or register in Copy Modal 2024-05-31 15:58:05 +02:00
davelopez 3c95ac03e6 Redirect anonymous users to home when importing public histories 2024-05-31 15:27:28 +02:00
Marius van den Beek d5e44b654a Merge pull request #18284 from mvdbeek/fix_up_first_dataset_element_type_hint 
[24.0] Fix first_dataset_element type hint
 2024-05-31 15:25:23 +02:00
mvdbeek 99aeadec06 Fix first_dataset_element type hint 2024-05-31 15:09:31 +02:00
davelopez da202e09f1 Check various preconditions in FeatureLocationIndexDataProvider 
And raise appropriate error otherwise
 2024-05-31 15:03:59 +02:00
Marius van den Beek 8dd7a9e570 Merge pull request #18263 from mvdbeek/page_summary_fix 
[24.0] Set page importable to false when serializing
 2024-05-31 12:37:30 +02:00
Marius van den Beek 93a07857c2 Merge pull request #18278 from mvdbeek/collection_download 
Don't attempt to download purged datasets
 2024-05-31 12:37:06 +02:00
Nicola Soranzo 761a8d9f04 Merge pull request #18236 from mvdbeek/none_delete_error 
[24.0] Only log error if deleting directory really failed
 2024-05-31 10:42:54 +01:00
Marius van den Beek 48231391a8 Drop key argument 
Did not want to do that actually
 2024-05-31 10:18:23 +02:00
Marius van den Beek aeaafc0cdc Merge pull request #18271 from jdavcs/231_ts_revision_tags 
[23.1] Add revision tags for TS migration in 23.1
 2024-05-31 10:02:29 +02:00
Marius van den Beek 942ddea389 Merge pull request #18255 from davelopez/24.0_fix_invenio_credentials_handling 
[24.0] Fix Invenio credentials handling
 2024-05-31 10:01:42 +02:00
John Chilton 4c8b4bf2a7 Merge pull request #18249 from mvdbeek/fix_no_elements_exception_extract_dataset 
[24.0] Raise exception when extracting dataset from collection without datasets
 2024-05-30 17:54:24 -04:00
John Chilton 1dd31f08f6 Merge pull request #18248 from mvdbeek/enable_transparent_use_of_compressed_datasets_in_DatasetDataProvider 
[24.0] Transparently open compressed files in DatasetDataProvider
 2024-05-30 17:53:20 -04:00
Martin Cech 0daf36d5d6 Merge pull request #18273 from nsoranzo/release_24.0_black 
[24.0] Format with black
 2024-05-30 23:03:56 +02:00
Nicola Soranzo 53bf8ce1de Format with black 2024-05-30 17:58:42 +01:00
Nicola Soranzo 3ea8de4ce5 Merge branch 'release_23.2' into release_24.0 2024-05-30 16:45:28 +01:00
Nicola Soranzo 94ebebf4ac Merge pull request #18268 from nsoranzo/release_23.2_fix_TestToolShedConfig 
[23.2] Add ``hgweb_repo_prefix`` attribute to ``TestToolShedConfig``
 2024-05-30 16:43:35 +01:00
John Davis 05eecfc219 Add revision tags for TS migration in 23.1 2024-05-30 11:36:57 -04:00
John Davis 15a8e6cc9a Merge branch 'release_23.2' into release_24.0 2024-05-30 11:11:12 -04:00
John Davis dbd063e00d Merge release_23.1 into release_23.2 2024-05-30 10:57:20 -04:00
Nicola Soranzo 6d068ca5f9 Add `hgweb_repo_prefix attribute to TestToolShedConfig` 
Fix the following error in unit tests:

```
AttributeError: 'TestToolShedConfig' object has no attribute 'hgweb_repo_prefix'
```

caused by merging commit b00beec3d2
forward.
 2024-05-30 15:16:38 +01:00
Marius van den Beek 90c9d4756f Merge pull request #18267 from jdavcs/231_ts_migration 
[23.1] Add missing TS migration
 2024-05-30 15:46:20 +02:00
John Davis d0d16ebf49 Make column non-nullable 2024-05-30 09:34:38 -04:00
Nicola Soranzo 713556029d Merge branch 'release_23.2' into release_24.0 2024-05-30 12:51:06 +01:00
Nicola Soranzo bd9a16988e Merge branch 'release_23.1' into release_23.2 2024-05-30 12:41:23 +01:00
mvdbeek 063d985650 Also set model to nullable=False 2024-05-30 11:50:43 +02:00
mvdbeek 4099fcc15a Set all old keys to deleted 2024-05-30 11:45:12 +02:00
Marius van den Beek 0db89059ef Merge pull request #18250 from mvdbeek/test_robustness 
[24.0] Skip tests if toolshed, dx.doi not responding
 2024-05-30 09:48:26 +02:00
John Davis a774c9234c Add ts db migration: deleted column to api_keys tbl 2024-05-29 22:49:30 -04:00
mvdbeek 0b6d925b8a Set page importable to false when serializing 
Fixes https://github.com/galaxyproject/galaxy/issues/18258
 2024-05-29 18:46:44 +02:00
Nate Coraor b121db548c Merge pull request #18256 from mvdbeek/server_external_hgweb 
[23.1] Minor fix to enable external hgweb process
 2024-05-29 11:58:14 -04:00
mvdbeek 410ccb9ab2 Fix up lock handling in hgweb_config_manager 2024-05-29 17:50:49 +02:00
mvdbeek b00beec3d2 Allow configuring hgweb repo prefix 2024-05-29 17:44:55 +02:00
davelopez 7cfba26fe1 Fix Invenio credentials handling 
Only ask for token when is really required
 2024-05-29 16:51:00 +02:00
mvdbeek 2ea3d342cc Import tool shed url 2024-05-29 15:29:39 +02:00
mvdbeek b0ea69e418 Fix import order 2024-05-29 13:58:09 +02:00
mvdbeek ce1582f46a Move assertions out request error handling 2024-05-29 13:50:29 +02:00