Cron scripts on test and main will need to be updated when the server is.
GOPS complement tool and annotation profiler will now correctly use chromosome lengths files if available.
MAF tool interfaces now support the use of index species and all species existing in cached alignment sets.
Until main is updated and the old maf_location files can be overwritten, these symbolic links are required:
maf_index.loc -> /depot/data2/galaxy/maf_index_new.loc
maf_pairwise.loc -> /depot/data2/galaxy/maf_pairwise_new.loc
For a multiple select, checkboxes must be used. When not allowing multiple values, radiobuttons must be used.
Options returned from user selections can either be exact, or recursive (the selection of an upper option will result in the passing of all lower options to the command line).
Options can be filtered based upon a metadata key of an input dataset.
Options can also be loaded from a configuration file that exists outside of the tool's xml file.
If javascript is enabled, option hierarchies are expandable and collapsable.
The annotation profiler has been updated to use this parameter type for table selection. See this tool as an example of use.
Greg Von Kuster