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Sample locally cached data files used by certain Galaxy tools.

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This commit is contained in:
Greg Von Kuster
2008-03-20 14:21:01 +00:00
parent 8c075e0d70
commit a2ed07169d
9 changed files with 329 additions and 0 deletions
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tool-data/alignseq.loc.sample
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#This is a sample file distributed with Galaxy that enables tools
#to use alignment data stored as axt files. You will need to index
#them and then create an alignseq.loc file similar to this one (store
#it in this directory ) that points to the directories in which those
#alignments are stored. The alignseq.loc file has this format ( white
#space characters are TAB characters:
#
#align <build1> <build2> <dir>
#
#So if you had hg18/mm8 alignments in /align/hg18/mm8, the alignseq.loc
#entry would look like this:
#
#align hg18 musMus8 /align/hg18/mm8
#
#Your file should include an entry per line for each alignment file
#you have stored.
#
align anoGam1 dm1 /depot/data2/galaxy/anoGam1/align/dm1
align anoGam1 dm2 /depot/data2/galaxy/anoGam1/align/dm2
align canFam1 hg17 /depot/data2/galaxy/canFam1/align/hg17
align canFam1 musMus6 /depot/data2/galaxy/canFam1/align/mm6
align canFam2 canFam2 /depot/data2/galaxy/canFam2/align/canFam2
align canFam2 hg17 /depot/data2/galaxy/canFam2/align/hg17
align canFam2 hg18 /depot/data2/galaxy/canFam2/align/hg18
align canFam2 musMus6 /depot/data2/galaxy/canFam2/align/mm6
align canFam2 musMus7 /depot/data2/galaxy/canFam2/align/mm7
align canFam2 musMus8 /depot/data2/galaxy/canFam2/align/mm8
align canFam2 ratNor3 /depot/data2/galaxy/canFam2/align/rn3
align canFam2 ratNor4 /depot/data2/galaxy/canFam2/align/rn4
align danRer2 fr1 /depot/data2/galaxy/danRer2/align/fr1
align danRer2 hg17 /depot/data2/galaxy/danRer2/align/hg17
align danRer2 musMus6 /depot/data2/galaxy/danRer2/align/mm6
align danRer2 tetNig1 /depot/data2/galaxy/danRer2/align/tetNig1
align danRer3 fr1 /depot/data2/galaxy/danRer3/align/fr1
align danRer3 hg18 /depot/data2/galaxy/danRer3/align/hg18
align danRer3 musMus7 /depot/data2/galaxy/danRer3/align/mm7
align danRer3 musMus8 /depot/data2/galaxy/danRer3/align/mm8
align danRer3 tetNig1 /depot/data2/galaxy/danRer3/align/tetNig1
align danRer4 fr1 /depot/data2/galaxy/danRer4/align/fr1
align danRer4 hg18 /depot/data2/galaxy/danRer4/align/hg18
align danRer4 musMus8 /depot/data2/galaxy/danRer4/align/mm8
align danRer4 ratNor4 /depot/data2/galaxy/danRer4/align/rn4
align danRer4 tetNig1 /depot/data2/galaxy/danRer4/align/tetNig1
tool-data/binned_scores.loc.sample
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#This is a sample file distributed with Galaxy that enables tools
#to use a directory of FileBinnedArray data files. You will need
#to create thes data files and then create a binned_scores.loc file
#similar to this one (store it in this directory ) that points to
#the directories in which those files are stored. The binned_scores.loc
#file has this format (white space characters are TAB characters):
#
#<build> <description> <dir>
#
#Your file should include an entry per line for each FileBinnedArray file
#you have stored.
#
hg16 ENCODE binCons on MLAGAN alignments /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan
hg16 ENCODE binCons on TBA alignments /depot/data2/galaxy/binned_scores/hg16/encode_bincons_tba
hg16 ENCODE GERP on MLAGAN alignment /depot/data2/galaxy/binned_scores/hg16/encode_gerp_lagan
hg16 ENCODE GERP on TBA alignment /depot/data2/galaxy/binned_scores/hg16/encode_gerp_tba
hg16 ENCODE phastCons on MLAGAN alignment /depot/data2/galaxy/binned_scores/hg16/encode_phastcons_lagan
hg16 ENCODE phastCons on TBA alignment /depot/data2/galaxy/binned_scores/hg16/encode_phatcons_tba
hg17 ENCODE phastCons on TBA alignment /depot/data2/galaxy/binned_scores/hg17/phastcons_encode_sep2005_tba
hg17 phastCons on 8-species multiz, 16-Jun-2005 /depot/data2/galaxy/binned_scores/hg17/phastcons_mzPt1Mm5Rn3Cf1Gg2Fr1Dr1/
hg17 phastCons on 17-species multiz, 13-Apr-2006 /depot/data2/galaxy/binned_scores/hg17/phastCons17way/ba
hg17 ESPERR Regulatory Potential, 7-species, 23-Jun-2006 /depot/data2/galaxy/binned_scores/hg17/esperr_rp_7way/ba
hg18 phastCons on 17-species multiz, 06-Apr-2006 /depot/data2/galaxy/binned_scores/hg18/phastCons17way/ba
tool-data/encode_datasets.loc.sample
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#This is a sample file distributed with Galaxy that enables tools
#to use ENCODE data. The encode_datasets.loc file has this format
#(white space characters are TAB characters):
#
#<EncodeGroup> <build> <DisplayName> <UniqueID> <FullPathToFile> <Format>
# Encode Groups: ShortHandCode = Group
# CC = chromatin and chromosomes
# GT = genes and transcripts
# MSA = multi-species sequence analysis
# TR = transcription regulation
# ALD = All Latest Datasets
#All files are assumbed to be BED.
#
ALD hg17 Latest Datasets (20051208) all_latest_datasets.20051208.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.bed bed
ALD hg17 Latest Datasets (20051208) [gencode_partitioned] all_latest_datasets.20051208.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20051208) [gencode_partitioned] all_latest_datasets.20051208.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20051208) all_latest_datasets.20051208.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gff gff
ALD hg17 Latest Datasets (20051209) all_latest_datasets.20051209.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.bed bed
ALD hg17 Latest Datasets (20051209) [gencode_partitioned] all_latest_datasets.20051209.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20051209) [gencode_partitioned] all_latest_datasets.20051209.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20051209) all_latest_datasets.20051209.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gff gff
ALD hg17 Latest Datasets (20051211) all_latest_datasets.20051211.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.bed bed
ALD hg17 Latest Datasets (20051211) [gencode_partitioned] all_latest_datasets.20051211.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20051211) [gencode_partitioned] all_latest_datasets.20051211.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20051211) all_latest_datasets.20051211.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gff gff
ALD hg17 Latest Datasets (20051212) all_latest_datasets.20051212.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.bed bed
ALD hg17 Latest Datasets (20051212) [gencode_partitioned] all_latest_datasets.20051212.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20051212) [gencode_partitioned] all_latest_datasets.20051212.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20051212) all_latest_datasets.20051212.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gff gff
ALD hg17 Latest Datasets (20051214) all_latest_datasets.20051214.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.bed bed
ALD hg17 Latest Datasets (20051214) [gencode_partitioned] all_latest_datasets.20051214.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20051214) [gencode_partitioned] all_latest_datasets.20051214.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20051214) all_latest_datasets.20051214.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gff gff
ALD hg17 Latest Datasets (20051216) all_latest_datasets.20051216.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.bed bed
ALD hg17 Latest Datasets (20051216) [gencode_partitioned] all_latest_datasets.20051216.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20051216) [gencode_partitioned] all_latest_datasets.20051216.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20051216) all_latest_datasets.20051216.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gff gff
ALD hg17 Latest Datasets (20060105) all_latest_datasets.20060105.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.bed bed
ALD hg17 Latest Datasets (20060105) [gencode_partitioned] all_latest_datasets.20060105.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20060105) [gencode_partitioned] all_latest_datasets.20060105.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20060105) all_latest_datasets.20060105.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gff gff
ALD hg17 Latest Datasets (20060106) all_latest_datasets.20060106.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.bed bed
ALD hg17 Latest Datasets (20060106) [gencode_partitioned] all_latest_datasets.20060106.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20060106) [gencode_partitioned] all_latest_datasets.20060106.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20060106) all_latest_datasets.20060106.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gff gff
ALD hg17 Latest Datasets (20060116) all_latest_datasets.20060116.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.bed bed
ALD hg17 Latest Datasets (20060116) [gencode_partitioned] all_latest_datasets.20060116.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20060116) [gencode_partitioned] all_latest_datasets.20060116.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20060116) all_latest_datasets.20060116.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gff gff
ALD hg17 Latest Datasets (20060124) all_latest_datasets.20060124.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.bed bed
ALD hg17 Latest Datasets (20060124) [gencode_partitioned] all_latest_datasets.20060124.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20060124) [gencode_partitioned] all_latest_datasets.20060124.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20060124) all_latest_datasets.20060124.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gff gff
ALD hg17 Latest Datasets (20060204) all_latest_datasets.20060204.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.bed bed
ALD hg17 Latest Datasets (20060204) [gencode_partitioned] all_latest_datasets.20060204.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20060204) [gencode_partitioned] all_latest_datasets.20060204.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20060204) all_latest_datasets.20060204.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gff gff
ALD hg17 Latest Datasets (20060206) all_latest_datasets.20060206.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.bed bed
ALD hg17 Latest Datasets (20060206) [gencode_partitioned] all_latest_datasets.20060206.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gencode_partitioned.bed bed
ALD hg17 Latest Datasets (20060206) [gencode_partitioned] all_latest_datasets.20060206.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gencode_partitioned.gff gff
ALD hg17 Latest Datasets (20060206) all_latest_datasets.20060206.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gff gff
ALD hg17 Latest Datasets (20060209) [gencode_partitioned] all_latest_datasets.20060209.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060209.gencode_partitioned.bed bed
CC hg17 EarlyRepSeg (20051216) cc.EarlyRepSeg.20051216.bed /depot/data2/galaxy/encode-data/datasets/cc.EarlyRepSeg.20051216.bed bed
CC hg17 EarlyRepSeg (20051216) [gencode_partitioned] cc.EarlyRepSeg.20051216.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.EarlyRepSeg.20051216.gencode_partitioned.bed bed
CC hg17 EarlyRepSeg (20051216) [gencode_partitioned] cc.EarlyRepSeg.20051216.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.EarlyRepSeg.20051216.gencode_partitioned.gff gff
CC hg17 EarlyRepSeg (20051216) cc.EarlyRepSeg.20051216.gff /depot/data2/galaxy/encode-data/datasets/cc.EarlyRepSeg.20051216.gff gff
CC hg17 LateRepSeg (20051216) cc.LateRepSeg.20051216.bed /depot/data2/galaxy/encode-data/datasets/cc.LateRepSeg.20051216.bed bed
CC hg17 LateRepSeg (20051216) [gencode_partitioned] cc.LateRepSeg.20051216.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.LateRepSeg.20051216.gencode_partitioned.bed bed
CC hg17 LateRepSeg (20051216) [gencode_partitioned] cc.LateRepSeg.20051216.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.LateRepSeg.20051216.gencode_partitioned.gff gff
CC hg17 LateRepSeg (20051216) cc.LateRepSeg.20051216.gff /depot/data2/galaxy/encode-data/datasets/cc.LateRepSeg.20051216.gff gff
CC hg17 MidRepSeg (20051216) cc.MidRepSeg.20051216.bed /depot/data2/galaxy/encode-data/datasets/cc.MidRepSeg.20051216.bed bed
CC hg17 MidRepSeg (20051216) [gencode_partitioned] cc.MidRepSeg.20051216.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.MidRepSeg.20051216.gencode_partitioned.bed bed
CC hg17 MidRepSeg (20051216) [gencode_partitioned] cc.MidRepSeg.20051216.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.MidRepSeg.20051216.gencode_partitioned.gff gff
CC hg17 MidRepSeg (20051216) cc.MidRepSeg.20051216.gff /depot/data2/galaxy/encode-data/datasets/cc.MidRepSeg.20051216.gff gff
CC hg17 nhgriHss (20051208) cc.nhgriHss.20051208.bed /depot/data2/galaxy/encode-data/datasets/cc.nhgriHss.20051208.bed bed
CC hg17 nhgriHss (20051208) [gencode_partitioned] cc.nhgriHss.20051208.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.nhgriHss.20051208.gencode_partitioned.bed bed
CC hg17 nhgriHss (20051208) [gencode_partitioned] cc.nhgriHss.20051208.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.nhgriHss.20051208.gencode_partitioned.gff gff
CC hg17 nhgriHss (20051208) cc.nhgriHss.20051208.gff /depot/data2/galaxy/encode-data/datasets/cc.nhgriHss.20051208.gff gff
CC hg17 PanSRepSeg (20051216) cc.PanSRepSeg.20051216.bed /depot/data2/galaxy/encode-data/datasets/cc.PanSRepSeg.20051216.bed bed
CC hg17 PanSRepSeg (20051216) [gencode_partitioned] cc.PanSRepSeg.20051216.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.PanSRepSeg.20051216.gencode_partitioned.bed bed
CC hg17 PanSRepSeg (20051216) [gencode_partitioned] cc.PanSRepSeg.20051216.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.PanSRepSeg.20051216.gencode_partitioned.gff gff
CC hg17 PanSRepSeg (20051216) cc.PanSRepSeg.20051216.gff /depot/data2/galaxy/encode-data/datasets/cc.PanSRepSeg.20051216.gff gff
CC hg17 PredictedOrigin (20051216) cc.PredictedOrigin.20051216.bed /depot/data2/galaxy/encode-data/datasets/cc.PredictedOrigin.20051216.bed bed
CC hg17 PredictedOrigin (20051216) [gencode_partitioned] cc.PredictedOrigin.20051216.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.PredictedOrigin.20051216.gencode_partitioned.bed bed
CC hg17 PredictedOrigin (20051216) [gencode_partitioned] cc.PredictedOrigin.20051216.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.PredictedOrigin.20051216.gencode_partitioned.gff gff
CC hg17 PredictedOrigin (20051216) cc.PredictedOrigin.20051216.gff /depot/data2/galaxy/encode-data/datasets/cc.PredictedOrigin.20051216.gff gff
CC hg17 regulomeHss (20051208) cc.regulomeHss.20051208.bed /depot/data2/galaxy/encode-data/datasets/cc.regulomeHss.20051208.bed bed
CC hg17 regulomeHss (20051208) [gencode_partitioned] cc.regulomeHss.20051208.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.regulomeHss.20051208.gencode_partitioned.bed bed
CC hg17 regulomeHss (20051208) [gencode_partitioned] cc.regulomeHss.20051208.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.regulomeHss.20051208.gencode_partitioned.gff gff
CC hg17 regulomeHss (20051208) cc.regulomeHss.20051208.gff /depot/data2/galaxy/encode-data/datasets/cc.regulomeHss.20051208.gff gff
CC hg17 uncFAIREsites (20051213) cc.uncFAIREsites.20051213.bed /depot/data2/galaxy/encode-data/datasets/cc.uncFAIREsites.20051213.bed bed
CC hg17 uncFAIREsites (20051213) [gencode_partitioned] cc.uncFAIREsites.20051213.gencode_partitioned.bed /depot/data2/galaxy/encode-data/datasets/cc.uncFAIREsites.20051213.gencode_partitioned.bed bed
CC hg17 uncFAIREsites (20051213) [gencode_partitioned] cc.uncFAIREsites.20051213.gencode_partitioned.gff /depot/data2/galaxy/encode-data/datasets/cc.uncFAIREsites.20051213.gencode_partitioned.gff gff
CC hg17 uncFAIREsites (20051213) cc.uncFAIREsites.20051213.gff /depot/data2/galaxy/encode-data/datasets/cc.uncFAIREsites.20051213.gff gff
GENCODE hg17 3UTR (20051206) gencode.3UTR.20051206.bed /depot/data2/galaxy/encode-data/datasets/gencode.3UTR.20051206.bed bed
GENCODE hg17 5UTR (20051206) gencode.5UTR.20051206.bed /depot/data2/galaxy/encode-data/datasets/gencode.5UTR.20051206.bed bed
GENCODE hg17 CDS (20051206) gencode.CDS.20051206.bed /depot/data2/galaxy/encode-data/datasets/gencode.CDS.20051206.bed bed
GENCODE hg17 intergenic_distal (20051206) gencode.intergenic_distal.20051206.bed /depot/data2/galaxy/encode-data/datasets/gencode.intergenic_distal.20051206.bed bed
GENCODE hg17 intergenic_proximal (20051206) gencode.intergenic_proximal.20051206.bed /depot/data2/galaxy/encode-data/datasets/gencode.intergenic_proximal.20051206.bed bed
GENCODE hg17 intronic_distal (20051206) gencode.intronic_distal.20051206.bed /depot/data2/galaxy/encode-data/datasets/gencode.intronic_distal.20051206.bed bed
GENCODE hg17 intronic_proximal (20051206) gencode.intronic_proximal.20051206.bed /depot/data2/galaxy/encode-data/datasets/gencode.intronic_proximal.20051206.bed bed
tool-data/liftOver.loc.sample
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#This is a sample file distributed with Galaxy that is used by the
#liftOver tools. The liftOver.loc file has this format (white space
#characters are TAB characters):
#
#<FromSpecies> <ToSpecies>
#
anoCar1 galGal3
anoCar1 gasAcu1
anoCar1 hg18
anoCar1 mm8
anoCar1 mm9
anoCar1 ornAna1
anoCar1 xenTro2
anoGam1 dm2
anoGam1 dm3
apiMel1 dm2
apiMel2 dm2
bosTau2 bosTau3
bosTau2 hg17
bosTau2 hg18
bosTau2 mm7
bosTau2 mm8
bosTau2 rn4
canFam1 canFam2
canFam1 hg17
canFam1 mm5
canFam1 mm6
canFam2 equCab1
canFam2 hg17
canFam2 hg18
canFam2 mm6
canFam2 mm7
canFam2 mm8
canFam2 mm9
canFam2 rn3
canFam2 rn4
ce2 ce4
ce4 caePb1
ce4 caeRem2
ce4 cb3
ce4 priPac1
tool-data/maf_index.loc.sample
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#This is a sample file distributed with Galaxy that is used by some
#alignment tools. The maf_index.loc file has this format (white space
#characters are TAB characters):
#
#<Display_name UID> <build1[=name_in_file1],build2[=name_in_file2]> <Comma_Separated_List_of_Full_Paths_To_Files>
#
ENCODE TBA (hg17) ENCODE_TBA_hg17 armadillo=armadillo,baboon=baboon,galGal2=chicken,panTro1=chimp,colobus_monkey=colobus_monkey,cow=cow,canFam1=dog,dusky_titi=dusky_titi,elephant=elephant,fr1=fugu,galago=galago,hedgehog=hedgehog,hg17=human,rheMac1=macaque,marmoset=marmoset,monDom1=monodelphis,mm6=mouse,mouse_lemur=mouse_lemur,owl_monkey=owl_monkey,platypus=platypus,rabbit=rabbit,rn3=rat,rfbat=rfbat,shrew=shrew,tenrec=tenrec,tetNig1=tetraodon,xenTro1=xenopus,danRer2=zebrafish /depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm001/human.ENm001.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm002/human.ENm002.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm003/human.ENm003.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm004/human.ENm004.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm005/human.ENm005.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm006/human.ENm006.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm007/human.ENm007.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm008/human.ENm008.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm009/human.ENm009.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm010/human.ENm010.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm011/human.ENm011.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm012/human.ENm012.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm013/human.ENm013.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm014/human.ENm014.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr111/human.ENr111.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr112/human.ENr112.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr113/human.ENr113.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr114/human.ENr114.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr121/human.ENr121.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr122/human.ENr122.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr123/human.ENr123.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr131/human.ENr131.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr132/human.ENr132.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr133/human.ENr133.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr211/human.ENr211.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr212/human.ENr212.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr213/human.ENr213.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr221/human.ENr221.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr222/human.ENr222.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr223/human.ENr223.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr231/human.ENr231.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr232/human.ENr232.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr233/human.ENr233.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr311/human.ENr311.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr312/human.ENr312.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr313/human.ENr313.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr321/human.ENr321.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr322/human.ENr322.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr323/human.ENr323.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr324/human.ENr324.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr331/human.ENr331.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr332/human.ENr332.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr333/human.ENr333.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr334/human.ENr334.maf
ENCODE MAVID (hg17) ENCODE_MAVID_hg17 armadillo=armadillo,baboon=baboon,galGal2=chicken,panTro1=chimp,colobus_monkey=colobus_monkey,cow=cow,canFam1=dog,dusky_titi=dusky_titi,elephant=elephant,fr1=fugu,galago=galago,hedgehog=hedgehog,hg17=human,rheMac1=macaque,marmoset=marmoset,monDom1=monodelphis,mm6=mouse,mouse_lemur=mouse_lemur,owl_monkey=owl_monkey,platypus=platypus,rabbit=rabbit,rn3=rat,rfbat=rfbat,shrew=shrew,tenrec=tenrec,tetNig1=tetraodon,xenTro1=xenopus,danRer2=zebrafish /depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm001.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm002.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm003.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm004.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm005.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm006.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm007.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm008.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm009.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm010.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm011.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm012.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm013.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm014.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr111.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr112.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr113.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr114.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr121.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr122.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr123.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr131.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr132.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr133.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr211.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr212.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr213.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr221.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr222.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr223.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr231.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr232.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr233.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr311.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr312.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr313.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr321.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr322.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr323.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr324.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr331.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr332.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr333.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr334.maf
#ENCODE TBA (hg17) ENCODE_TBA_hg17 armadillo=armadillo,baboon=baboon,galGal2=chicken,panTro1=chimp,colobus_monkey=colobus_monkey,cow=cow,canFam1=dog,dusky_titi=dusky_titi,elephant=elephant,fr1=fugu,galago=galago,hedgehog=hedgehog,hg17=human,rheMac1=macaque,marmoset=marmoset,monDom1=monodelphis,mm6=mouse,mouse_lemur=mouse_lemur,owl_monkey=owl_monkey,platypus=platypus,rabbit=rabbit,rn3=rat,rfbat=rfbat,shrew=shrew,tenrec=tenrec,tetNig1=tetraodon,xenTro1=xenopus,danRer2=zebrafish /depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENm001/human.ENm001.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENm002/human.ENm002.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENm003/human.ENm003.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENm004/human.ENm004.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENm005/human.ENm005.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENm006/human.ENm006.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENm007/human.ENm007.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENm008/human.ENm008.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENm009/human.ENm009.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENm010/human.ENm010.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENm011/human.ENm011.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENm012/human.ENm012.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENm013/human.ENm013.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENm014/human.ENm014.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr111/human.ENr111.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr112/human.ENr112.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr113/human.ENr113.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr114/human.ENr114.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr121/human.ENr121.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr122/human.ENr122.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr123/human.ENr123.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr131/human.ENr131.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr132/human.ENr132.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr133/human.ENr133.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr211/human.ENr211.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr212/human.ENr212.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr213/human.ENr213.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr221/human.ENr221.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr222/human.ENr222.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr223/human.ENr223.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr231/human.ENr231.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr232/human.ENr232.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr233/human.ENr233.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr311/human.ENr311.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr312/human.ENr312.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr313/human.ENr313.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr321/human.ENr321.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr322/human.ENr322.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr323/human.ENr323.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr324/human.ENr324.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr331/human.ENr331.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr332/human.ENr332.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr333/human.ENr333.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/tba/ENr334/human.ENr334.maf
#ENCODE MAVID (hg17) ENCODE_MAVID_hg17 armadillo=armadillo,baboon=baboon,galGal2=chicken,panTro1=chimp,colobus_monkey=colobus_monkey,cow=cow,canFam1=dog,dusky_titi=dusky_titi,elephant=elephant,fr1=fugu,galago=galago,hedgehog=hedgehog,hg17=human,rheMac1=macaque,marmoset=marmoset,monDom1=monodelphis,mm6=mouse,mouse_lemur=mouse_lemur,owl_monkey=owl_monkey,platypus=platypus,rabbit=rabbit,rn3=rat,rfbat=rfbat,shrew=shrew,tenrec=tenrec,tetNig1=tetraodon,xenTro1=xenopus,danRer2=zebrafish /depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENm001.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENm002.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENm003.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENm004.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENm005.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENm006.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENm007.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENm008.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENm009.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENm010.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENm011.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENm012.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENm013.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENm014.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr111.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr112.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr113.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr114.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr121.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr122.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr123.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr131.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr132.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr133.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr211.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr212.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr213.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr221.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr222.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr223.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr231.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr232.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr233.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr311.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr312.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr313.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr321.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr322.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr323.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr324.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr331.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr332.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr333.maf,/depot/data2/galaxy/hg17/align/encode/september2005_relabeled/mavid/abs/ENr334.maf
ENCODE TBA (hg16) ENCODE_TBA_hg16 armadillo=armadillo,baboon=baboon,galGal2=galGal2,panTro1=panTro1,colobus_monkey=colobus_monkey,cow=cow,canFam1=canFam1,dusky_titi=dusky_titi,elephant=elephant,fr1=fr1,galago=galago,hedgehog=hedgehog,hg16=hg16,rheMac1=rheMac1,marmoset=marmoset,monDom1=monDom1,mm6=mm6,mouse_lemur=mouse_lemur,owl_monkey=owl_monkey,platypus=platypus,rabbit=rabbit,rn3=rn3,rfbat=rfbat,shrew=shrew,tenrec=tenrec,tetNig1=tetNig1,xenTro1=xenopus,danRer2=danRer2 /depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm001.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm002.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm003.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm004.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm005.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm006.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm007.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm008.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm009.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm010.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm011.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm012.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm013.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm014.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr111.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr112.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr113.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr114.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr121.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr122.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr123.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr131.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr132.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr133.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr211.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr212.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr213.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr221.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr222.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr223.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr231.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr232.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr233.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr311.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr312.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr313.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr321.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr322.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr323.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr324.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr331.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr332.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr333.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr334.maf
8-way multiZ (hg17) 8_WAY_MULTIZ_hg17 canFam1,danRer1,fr1,galGal2,hg17,mm5,panTro1,rn3 /depot/data2/galaxy/hg17/align/8way-multiZ/chr1.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr1_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr10.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr10_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr11.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr12.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr12_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr13.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr13_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr14.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr15.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr15_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr16.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr16_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr17.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr17_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr18.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr18_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr19.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr19_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr2.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr2_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr20.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr21.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr22.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr22_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr3.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr3_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr4.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr4_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr5.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr5_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr6.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr6_hla_hap1.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr6_hla_hap2.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr6_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr7.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr7_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr8.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr8_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr9.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr9_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chrM.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chrX.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chrX_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chrY.maf
17-way multiZ (hg18) 17_WAY_MULTIZ_hg18 hg18,panTro1,bosTau2,rheMac2,mm8,rn4,canFam2,echTel1,loxAfr1,oryCun1,danRer3,monDom4,dasNov1,galGal2,fr1,tetNig1,xenTro1 /depot/data2/galaxy/hg18/align/17way-multiZ/chr10.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr10_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr11.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr11_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr12.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr13.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr13_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr14.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr15.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr15_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr16.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr16_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr17.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr17_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr18.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr18_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr19.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr19_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr1.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr1_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr20.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr21.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr21_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr22_h2_hap1.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr22.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr22_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr2.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr2_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr3.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr3_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr4.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr4_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr5_h2_hap1.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr5.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr5_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr6_cox_hap1.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr6.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr6_qbl_hap2.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr6_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr7.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr7_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr8.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr8_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr9.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr9_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chrM.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chrX.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chrX_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chrY.maf
#3-way multiZ (hg18,panTro2,rheMac2) 3_WAY_MULTIZ_hg18 hg18,panTro2,rheMac2 /cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr10.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr10_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr11.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr11_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr12.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr13.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr13_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr14.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr15.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr15_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr16.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr16_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr17.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr17_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr18.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr18_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr19.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr19_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr1.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr1_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr20.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr21.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr21_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr22_h2_hap1.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr22.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr22_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr2.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr2_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr3.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr3_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr4.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr4_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr5_h2_hap1.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr5.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr5_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr6_cox_hap1.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr6.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr6_qbl_hap2.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr6_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr7.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr7_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr8.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr8_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr9.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chr9_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chrM.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chrX.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chrX_random.maf,/cache/maf/hg18/align/hg18.panTro2.rheMac2.multiZ/chrY.maf
3-way multiZ (hg18,panTro2,rheMac2) 3_WAY_MULTIZ_hg18 hg18,panTro2,rheMac2 /depot/data2/galaxy/hg18/align/3way-multiZ/chr10.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr10_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr11.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr11_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr12.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr13.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr13_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr14.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr15.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr15_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr16.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr16_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr17.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr17_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr18.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr18_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr19.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr19_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr1.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr1_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr20.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr21.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr21_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr22_h2_hap1.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr22.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr22_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr2.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr2_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr3.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr3_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr4.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr4_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr5_h2_hap1.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr5.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr5_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr6_cox_hap1.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr6.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr6_qbl_hap2.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr6_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr7.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr7_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr8.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr8_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr9.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr9_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chrM.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chrX.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chrX_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chrY.maf
5-way multiZ (hg18,panTro2,rheMac2,mm8,canFam2) 5_WAY_MULTIZ_hg18 hg18,panTro2,rheMac2,mm8,canFam2 /depot/data2/galaxy/hg18/align/5way-multiZ/chr10.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr10_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr11.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr11_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr12.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr13.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr13_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr14.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr15.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr15_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr16.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr16_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr17.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr17_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr18.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr18_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr19.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr19_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr1.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr1_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr20.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr21.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr21_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr22_h2_hap1.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr22.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr22_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr2.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr2_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr3.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr3_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr4.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr4_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr5_h2_hap1.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr5.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr5_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr6_cox_hap1.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr6.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr6_qbl_hap2.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr6_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr7.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr7_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr8.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr8_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr9.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr9_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chrM.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chrX.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chrX_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chrY.maf
#28-way multiZ (hg18) 28_WAY_MULTIZ_hg18 hg18 /depot/data2/galaxy/hg18/align/multiz28way/chr10.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr10_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr11.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr11_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr12.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr13.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr13_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr14.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr15.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr15_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr16.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr16_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr17.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr17_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr18.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr18_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr19.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr19_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr1.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr1_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr20.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr21.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr21_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr22_h2_hap1.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr22.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr22_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr2.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr2_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr3.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr3_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr4.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr4_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr5_h2_hap1.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr5.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr5_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr6_cox_hap1.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr6.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr6_qbl_hap2.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr6_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr7.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr7_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr8.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr8_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr9.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chr9_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chrM.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chrX.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chrX_random.maf.bz2,/depot/data2/galaxy/hg18/align/multiz28way/chrY.maf.bz2
28-way multiZ (hg18) 28_WAY_MULTIZ_hg18 hg18 /depot/data2/galaxy/hg18/align/multiz28way/chr1.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr10.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr10_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr11.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr11_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr12.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr13.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr13_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr14.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr15.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr15_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr16.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr16_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr17.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr17_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr18.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr18_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr19.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr19_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr1_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr2.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr20.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr21.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr21_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr22.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr22_h2_hap1.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr22_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr2_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr3.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr3_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr4.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr4_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr5.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr5_h2_hap1.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr5_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr6.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr6_cox_hap1.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr6_qbl_hap2.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr6_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr7.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr7_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr8.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr8_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr9.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr9_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chrM.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chrX.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chrX_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chrY.maf.lzo
15-way multiZ (dm2) 15_WAY_MULTIZ_dm2 dm2,droSim1,droSec1,droYak2,droEre2,droAna3,dp4,droPer1,droWil1,droVir3,droMoj3,droGri2,anoGam1,apiMel2,triCas2 /depot/data2/galaxy/dm2/align/multiz15way/chr2L.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr2R.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr2h.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr3L.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr3R.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr3h.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr4.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr4h.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrM.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrU.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrX.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrXh.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrYh.maf
17-way multiZ (mm8) 17_WAY_MULTIZ_mm8 mm8 /depot/data2/galaxy/mm8/align/multiz17way/chr10.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr10_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr11.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr12.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr13.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr13_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr14.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr15.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr15_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr16.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr17.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr17_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr18.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr19.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr1.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr1_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr2.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr3.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr4.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr5.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr5_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr6.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr7.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr7_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr8.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr8_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr9.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr9_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrM.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrUn_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrX.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrX_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrY.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrY_random.maf.lzo
8-way multiZ (ponAbe2) 8_WAY_MULTIZ_ponAbe2 ponAbe2,hg18,panTro2,rheMac2,calJac1,mm9,monDom4,ornAna1 /depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr10.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr10_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr11.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr11_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr12.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr12_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr13.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr13_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr14.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr14_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr15.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr15_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr16.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr16_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr17.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr17_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr18.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr18_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr19.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr19_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr1.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr1_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr20.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr20_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr21.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr21_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr22.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr22_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr2a.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr2a_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr2b.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr2b_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr3.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr3_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr4.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr4_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr5_h2_hap1.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr5.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr5_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_cox_hap1.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_cox_hap1_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_qbl_hap2.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_qbl_hap2_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr7.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr7_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr8.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr8_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr9.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr9_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chrM.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chrUn.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chrX.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chrX_random.maf.lzo
tool-data/maf_pairwise.loc.sample
+31
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#This is a sample file distributed with Galaxy that is used by some
#alignment tools. The maf_pairwise.loc file has this format (white
#space characters are TAB characters):
#
#<Display_name> <UID> <build1[=name_in_file1],build2[=name_in_file2]> <Comma_Separated_List_of_Full_Paths_To_Files>
#
Pairwise (anoGam1,dm2) PAIRWISE_anoGam1_dm2 anoGam1,dm2 /depot/data2/galaxy/anoGam1/align/dm2/maf/chr2L.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chr2R.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chr3L.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chr3R.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chrM.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chrU.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chrX.maf
Pairwise (canFam1,hg17) PAIRWISE_canFam1_hg17 canFam1,hg17 /depot/data2/galaxy/canFam1/align/hg17/maf/chr1.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr10.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr11.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr12.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr13.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr14.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr15.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr16.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr17.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr18.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr19.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr2.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr20.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr21.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr22.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr23.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr24.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr25.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr26.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr27.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr28.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr29.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr3.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr30.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr31.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr32.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr33.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr34.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr35.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr36.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr37.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr38.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr4.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr5.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr6.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr7.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr8.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr9.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chrM.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chrUn.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chrX.maf
Pairwise (canFam1,mm6) PAIRWISE_canFam1_mm6 canFam1,mm6 /depot/data2/galaxy/canFam1/align/mm6/maf/chr1.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr10.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr11.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr12.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr13.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr14.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr15.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr16.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr17.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr18.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr19.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr2.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr20.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr21.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr22.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr23.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr24.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr25.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr26.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr27.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr28.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr29.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr3.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr30.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr31.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr32.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr33.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr34.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr35.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr36.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr37.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr38.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr4.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr5.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr6.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr7.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr8.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr9.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chrM.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chrUn.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chrX.maf
Pairwise (canFam2,canFam2) PAIRWISE_canFam2_canFam2 canFam2,canFam2 /depot/data2/galaxy/canFam2/align/canFam2/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chrX.maf
Pairwise (canFam2,hg17) PAIRWISE_canFam2_hg17 canFam2,hg17 /depot/data2/galaxy/canFam2/align/hg17/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chrX.maf
Pairwise (canFam2,hg18) PAIRWISE_canFam2_hg18 canFam2,hg18 /depot/data2/galaxy/canFam2/align/hg18/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chrX.maf
Pairwise (canFam2,mm6) PAIRWISE_canFam2_mm6 canFam2,mm6 /depot/data2/galaxy/canFam2/align/mm6/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chrX.maf
Pairwise (canFam2,mm7) PAIRWISE_canFam2_mm7 canFam2,mm7 /depot/data2/galaxy/canFam2/align/mm7/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chrX.maf
Pairwise (canFam2,mm8) PAIRWISE_canFam2_mm8 canFam2,mm8 /depot/data2/galaxy/canFam2/align/mm8/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chrX.maf
Pairwise (canFam2,rn3) PAIRWISE_canFam2_rn3 canFam2,rn3 /depot/data2/galaxy/canFam2/align/rn3/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chrX.maf
Pairwise (canFam2,rn4) PAIRWISE_canFam2_rn4 canFam2,rn4 /depot/data2/galaxy/canFam2/align/rn4/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chrX.maf
Pairwise (danRer2,fr1) PAIRWISE_danRer2_fr1 danRer2,fr1 /depot/data2/galaxy/danRer2/align/fr1/maf/chr1.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr10.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr11.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr12.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr13.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr14.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr15.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr16.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr17.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr18.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr19.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr2.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr20.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr21.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr22.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr23.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr24.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr25.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr3.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr4.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr5.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr6.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr7.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr8.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr9.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chrM.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chrNA.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chrUn.maf
Pairwise (danRer2,hg17) PAIRWISE_danRer2_hg17 danRer2,hg17 /depot/data2/galaxy/danRer2/align/hg17/maf/chr1.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr10.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr11.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr12.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr13.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr14.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr15.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr16.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr17.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr18.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr19.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr2.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr20.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr21.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr22.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr23.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr24.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr25.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr3.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr4.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr5.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr6.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr7.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr8.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr9.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chrM.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chrNA.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chrUn.maf
Pairwise (danRer2,mm6) PAIRWISE_danRer2_mm6 danRer2,mm6 /depot/data2/galaxy/danRer2/align/mm6/maf/chr1.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr10.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr11.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr12.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr13.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr14.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr15.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr16.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr17.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr18.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr19.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr2.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr20.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr21.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr22.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr23.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr24.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr25.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr3.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr4.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr5.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr6.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr7.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr8.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr9.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chrM.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chrNA.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chrUn.maf
Pairwise (danRer2,tetNig1) PAIRWISE_danRer2_tetNig1 danRer2,tetNig1 /depot/data2/galaxy/danRer2/align/tetNig1/maf/chr1.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr10.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr11.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr12.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr13.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr14.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr15.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr16.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr17.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr18.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr19.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr2.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr20.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr21.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr22.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr23.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr24.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr25.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr3.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr4.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr5.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr6.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr7.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr8.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr9.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chrM.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chrNA.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chrUn.maf
Pairwise (danRer3,fr1) PAIRWISE_danRer3_fr1 danRer3,fr1 /depot/data2/galaxy/danRer3/align/fr1/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chrM.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chrNA.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chrUn.maf
Pairwise (danRer3,hg18) PAIRWISE_danRer3_hg18 danRer3,hg18 /depot/data2/galaxy/danRer3/align/hg18/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chrM.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chrNA.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chrUn.maf
Pairwise (danRer3,mm7) PAIRWISE_danRer3_mm7 danRer3,mm7 /depot/data2/galaxy/danRer3/align/mm7/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chrM.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chrNA.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chrUn.maf
Pairwise (danRer3,mm8) PAIRWISE_danRer3_mm8 danRer3,mm8 /depot/data2/galaxy/danRer3/align/mm8/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chrM.maf
Pairwise (danRer3,tetNig1) PAIRWISE_danRer3_tetNig1 danRer3,tetNig1 /depot/data2/galaxy/danRer3/align/tetNig1/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chrM.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chrNA.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chrUn.maf
Pairwise (danRer4,fr1) PAIRWISE_danRer4_fr1 danRer4,fr1 /depot/data2/galaxy/danRer4/align/fr1/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chrUn_random.maf
Pairwise (danRer4,hg18) PAIRWISE_danRer4_hg18 danRer4,hg18 /depot/data2/galaxy/danRer4/align/hg18/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chrUn_random.maf
Pairwise (danRer4,mm8) PAIRWISE_danRer4_mm8 danRer4,mm8 /depot/data2/galaxy/danRer4/align/mm8/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chrUn_random.maf
Pairwise (danRer4,rn4) PAIRWISE_danRer4_rn4 danRer4,rn4 /depot/data2/galaxy/danRer4/align/rn4/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chrUn_random.maf
Pairwise (danRer4,tetNig1) PAIRWISE_danRer4_tetNig1 danRer4,tetNig1 /depot/data2/galaxy/danRer4/align/tetNig1/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chrUn_random.maf
tool-data/microbial_data.loc.sample
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#This is a sample file distributed with Galaxy that enables tools
#to retrieve microbial data via a URL .
#
ORG campJeju_RM1221_1 Campylobacter jejuni RM1221 bacteria Epsilonproteobacteria chr http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=303 UCSC
CHR campJeju_RM1221_1 chr Campylobacter jejuni RM1221, complete genome 1777831 57236892 None http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_003912
DATA campJeju_RM1221_1_chr_CDS campJeju_RM1221_1 chr CDS bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.CDS.bed
DATA campJeju_RM1221_1_chr_tRNA campJeju_RM1221_1 chr tRNA bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.tRNA.bed
DATA campJeju_RM1221_1_chr_rRNA campJeju_RM1221_1 chr rRNA bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.rRNA.bed
DATA campJeju_RM1221_1_chr_seq campJeju_RM1221_1 chr sequence fasta /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.fna
DATA campJeju_RM1221_1_chr_GeneMark campJeju_RM1221_1 chr GeneMark bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.GeneMark.bed
DATA campJeju_RM1221_1_chr_GeneMarkHMM campJeju_RM1221_1 chr GeneMarkHMM bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.GeneMarkHMM.bed
DATA campJeju_RM1221_1_chr_Glimmer3 campJeju_RM1221_1 chr Glimmer3 bed /depot/data2/galaxy/microbes/campJeju_RM1221_1/chr.Glimmer3.bed
ORG 12521 Clostridium perfringens SM101 bacteria Firmicutes NC_008262,NC_008263,NC_008264,NC_008265 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=12521 None
CHR 12521 NC_008265 Clostridium perfringens phage phiSM101, complete genome 38092 110804020 None http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_008265
DATA 12521_NC_008265_CDS 12521 NC_008265 CDS bed /depot/data2/galaxy/microbes/12521/NC_008265.CDS.bed
DATA 12521_NC_008265_tRNA 12521 NC_008265 tRNA bed /depot/data2/galaxy/microbes/12521/NC_008265.tRNA.bed
DATA 12521_NC_008265_rRNA 12521 NC_008265 rRNA bed /depot/data2/galaxy/microbes/12521/NC_008265.rRNA.bed
DATA 12521_NC_008265_seq 12521 NC_008265 sequence fasta /depot/data2/galaxy/microbes/12521/NC_008265.fna
DATA 12521_NC_008265_GeneMark 12521 NC_008265 GeneMark bed /depot/data2/galaxy/microbes/12521/NC_008265.GeneMark.bed
DATA 12521_NC_008265_GeneMarkHMM 12521 NC_008265 GeneMarkHMM bed /depot/data2/galaxy/microbes/12521/NC_008265.GeneMarkHMM.bed
DATA 12521_NC_008265_Glimmer3 12521 NC_008265 Glimmer3 bed /depot/data2/galaxy/microbes/12521/NC_008265.Glimmer3.bed
CHR 12521 NC_008264 Clostridium perfringens SM101 plasmid 2, complete sequence 12206 110804009 None http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_008264
DATA 12521_NC_008264_CDS 12521 NC_008264 CDS bed /depot/data2/galaxy/microbes/12521/NC_008264.CDS.bed
DATA 12521_NC_008264_tRNA 12521 NC_008264 tRNA bed /depot/data2/galaxy/microbes/12521/NC_008264.tRNA.bed
DATA 12521_NC_008264_rRNA 12521 NC_008264 rRNA bed /depot/data2/galaxy/microbes/12521/NC_008264.rRNA.bed
DATA 12521_NC_008264_seq 12521 NC_008264 sequence fasta /depot/data2/galaxy/microbes/12521/NC_008264.fna
DATA 12521_NC_008264_GeneMark 12521 NC_008264 GeneMark bed /depot/data2/galaxy/microbes/12521/NC_008264.GeneMark.bed
DATA 12521_NC_008264_GeneMarkHMM 12521 NC_008264 GeneMarkHMM bed /depot/data2/galaxy/microbes/12521/NC_008264.GeneMarkHMM.bed
DATA 12521_NC_008264_Glimmer3 12521 NC_008264 Glimmer3 bed /depot/data2/galaxy/microbes/12521/NC_008264.Glimmer3.bed
CHR 12521 NC_008263 Clostridium perfringens SM101 plasmid 1, complete sequence 12397 110803998 None http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_008263
DATA 12521_NC_008263_CDS 12521 NC_008263 CDS bed /depot/data2/galaxy/microbes/12521/NC_008263.CDS.bed
DATA 12521_NC_008263_tRNA 12521 NC_008263 tRNA bed /depot/data2/galaxy/microbes/12521/NC_008263.tRNA.bed
DATA 12521_NC_008263_rRNA 12521 NC_008263 rRNA bed /depot/data2/galaxy/microbes/12521/NC_008263.rRNA.bed
DATA 12521_NC_008263_seq 12521 NC_008263 sequence fasta /depot/data2/galaxy/microbes/12521/NC_008263.fna
DATA 12521_NC_008263_GeneMark 12521 NC_008263 GeneMark bed /depot/data2/galaxy/microbes/12521/NC_008263.GeneMark.bed
DATA 12521_NC_008263_GeneMarkHMM 12521 NC_008263 GeneMarkHMM bed /depot/data2/galaxy/microbes/12521/NC_008263.GeneMarkHMM.bed
DATA 12521_NC_008263_Glimmer3 12521 NC_008263 Glimmer3 bed /depot/data2/galaxy/microbes/12521/NC_008263.Glimmer3.bed
CHR 12521 NC_008262 Clostridium perfringens SM101, complete genome 2897393 110801439 None http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_008262
DATA 12521_NC_008262_CDS 12521 NC_008262 CDS bed /depot/data2/galaxy/microbes/12521/NC_008262.CDS.bed
DATA 12521_NC_008262_tRNA 12521 NC_008262 tRNA bed /depot/data2/galaxy/microbes/12521/NC_008262.tRNA.bed
DATA 12521_NC_008262_rRNA 12521 NC_008262 rRNA bed /depot/data2/galaxy/microbes/12521/NC_008262.rRNA.bed
DATA 12521_NC_008262_seq 12521 NC_008262 sequence fasta /depot/data2/galaxy/microbes/12521/NC_008262.fna
DATA 12521_NC_008262_GeneMark 12521 NC_008262 GeneMark bed /depot/data2/galaxy/microbes/12521/NC_008262.GeneMark.bed
DATA 12521_NC_008262_GeneMarkHMM 12521 NC_008262 GeneMarkHMM bed /depot/data2/galaxy/microbes/12521/NC_008262.GeneMarkHMM.bed
DATA 12521_NC_008262_Glimmer3 12521 NC_008262 Glimmer3 bed /depot/data2/galaxy/microbes/12521/NC_008262.Glimmer3.bed
ORG 13086 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 bacteria Gammaproteobacteria NC_006511 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13086 None
CHR 13086 NC_006511 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, complete genome 4585229 56412276 None http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_006511
DATA 13086_NC_006511_CDS 13086 NC_006511 CDS bed /depot/data2/galaxy/microbes/13086/NC_006511.CDS.bed
DATA 13086_NC_006511_tRNA 13086 NC_006511 tRNA bed /depot/data2/galaxy/microbes/13086/NC_006511.tRNA.bed
DATA 13086_NC_006511_rRNA 13086 NC_006511 rRNA bed /depot/data2/galaxy/microbes/13086/NC_006511.rRNA.bed
DATA 13086_NC_006511_seq 13086 NC_006511 sequence fasta /depot/data2/galaxy/microbes/13086/NC_006511.fna
DATA 13086_NC_006511_GeneMark 13086 NC_006511 GeneMark bed /depot/data2/galaxy/microbes/13086/NC_006511.GeneMark.bed
DATA 13086_NC_006511_GeneMarkHMM 13086 NC_006511 GeneMarkHMM bed /depot/data2/galaxy/microbes/13086/NC_006511.GeneMarkHMM.bed
DATA 13086_NC_006511_Glimmer3 13086 NC_006511 Glimmer3 bed /depot/data2/galaxy/microbes/13086/NC_006511.Glimmer3.bed
tool-data/phastOdds.loc.sample
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#This is a sample file distributed with Galaxy that is used by the
#phastOdds scores tool. The phastOdds.loc file has this format (white space
#characters are TAB characters):
#
#<build> <description> <path to phastOdds score files>
#
hg17 ENCODE regions only, SEP-2005 tba.v2 alignments /depot/data2/galaxy/phastOdds_precomputed/encode_SEP-2005_tba.v2_phastOdds
tool-data/regions.loc.sample
+8
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@@ -0,0 +1,8 @@
#This is a sample file distributed with Galaxy that is used by some
#ENCODE tools. The regions.loc file has this format (white space
#characters are TAB characters):
#
#<build> <uid> <region_description> <file_path>
#
hg16 encode_hg16 ENCODE Regions /depot/data2/galaxy/regions/encode_regions_coords_hg16.bed
hg17 encode_hg17 ENCODE Regions /depot/data2/galaxy/regions/encode_regions_coords_hg17.bed