Nicola Soranzo
39da6c3278
Fix the remaining 2180 flake8 errors in tools/ .
2016-02-10 18:46:03 +00:00
John Chilton
591519009b
Add citations to a few more tools.
2015-10-05 15:12:46 +01:00
Daniel Blankenberg
8b402babb2
Update SRMA wrapper to use data tables.
2011-10-31 09:49:51 -04:00
Kelly Vincent
9eaf2ec821
Updated SRMA to properly set dbkey and changed functional tests so that they can handle a single line difference for the SRMA version number tag
2011-05-11 10:49:32 -04:00
Nate Coraor
1fdfacc977
Set the ftype of SRMA test outputs so the BAMs are compared as SAMs
2011-03-23 10:59:26 -04:00
Kelly Vincent
a4f910c730
Update SRMA test files so that functional tests pass
2011-03-08 16:17:09 -05:00
Kelly Vincent
8c13d8e6e8
Corrected output labels to be in line with other tools for NGS tools: sam_to_bam, sam_merge, sam_pileup, bam_to_sam, PerM, bowtie_color_wrapper, bowtie_wrapper, bwa_wrapper, lastz_paired_reads_wrapper, lastz_wrapper, srma_wrapper
2011-01-12 13:31:04 -05:00
Kelly Vincent
f61d147034
Added --max and --un file output options to Bowtie and modified tests to test for them.
...
Made Bowtie test files longer (more than one test read).
Added explanation of canonical and full reference genome variants to BWA and Bowtie.
Added informative labels to output files for NGS tools.
2010-12-01 10:54:35 -05:00
Kelly Vincent
7d0ff14df9
Converted several tools to data table style of loc file handling (Bowtie, BWA, Lastz, Megablast, PerM, SRMA). Cleaned up several tool XML files, removing unnecessary None parameters.
2010-11-08 00:10:13 -05:00
Kelly Vincent
f6a3996d9b
Adding SRMA wrapper and all associated test files and index loc sample
2010-08-19 18:17:31 -04:00
Nicola Soranzo