 Dannon Baker
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03351d2a9f
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Apply black to tools as well
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2022-02-03 09:12:13 -05:00 |
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Nicola Soranzo
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21b44bf348
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Fix all E201 and E202 style errors
using the following command:
```
autopep8 -i -r --exclude $(sed -e 's|^|./|' -e 's|/$||' .ci/flake8_blacklist.txt | paste -sd,) --select E201,E202 .
```
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2017-08-17 11:35:39 +01:00 |
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Nicola Soranzo
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1d17a29c79
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Fixes for pycodestyle 2.2.0
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2016-11-15 16:56:50 +00:00 |
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Nicola Soranzo
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39da6c3278
|
Fix the remaining 2180 flake8 errors in tools/ .
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2016-02-10 18:46:03 +00:00 |
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John Chilton
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34e1273f9b
|
Rework pull request #489 memory handling to respect deployer set _JAVA_OPTIONS.
As discussed here https://bitbucket.org/galaxy/galaxy-central/pull-request/489/srma-tool-requires-at-least-2048m-memory/diff. Thanks to Bjoern for input.
|
2014-09-22 13:20:49 -04:00 |
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Lance Parsons
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0a3e5d274f
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SRMA tool requires at least 2048m memory and LENIENT validation stringency
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2014-09-04 16:12:51 -04:00 |
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Daniel Blankenberg
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8b402babb2
|
Update SRMA wrapper to use data tables.
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2011-10-31 09:49:51 -04:00 |
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Kelly Vincent
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9eaf2ec821
|
Updated SRMA to properly set dbkey and changed functional tests so that they can handle a single line difference for the SRMA version number tag
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2011-05-11 10:49:32 -04:00 |
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Kelly Vincent
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7d0ff14df9
|
Converted several tools to data table style of loc file handling (Bowtie, BWA, Lastz, Megablast, PerM, SRMA). Cleaned up several tool XML files, removing unnecessary None parameters.
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2010-11-08 00:10:13 -05:00 |
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Kelly Vincent
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f6a3996d9b
|
Adding SRMA wrapper and all associated test files and index loc sample
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2010-08-19 18:17:31 -04:00 |
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