 Dannon Baker
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03351d2a9f
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Apply black to tools as well
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2022-02-03 09:12:13 -05:00 |
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John Chilton
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54e8d22fa7
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Check types of modules without type annotations in the their signatures on new modules.
https://mypy.readthedocs.io/en/stable/command_line.html#cmdoption-mypy-check-untyped-defs
> it type checks the body of every function, regardless of whether it has type annotations. (By default the bodies of functions without annotations are not type checked.)
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2021-10-11 16:08:26 -04:00 |
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Nicola Soranzo
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f5cd88465e
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Make str.join()s more efficient
by using generator expressions and tuples instead of lists.
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2020-01-23 11:06:32 +00:00 |
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Nicola Soranzo
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21b44bf348
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Fix all E201 and E202 style errors
using the following command:
```
autopep8 -i -r --exclude $(sed -e 's|^|./|' -e 's|/$||' .ci/flake8_blacklist.txt | paste -sd,) --select E201,E202 .
```
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2017-08-17 11:35:39 +01:00 |
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Nicola Soranzo
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1d17a29c79
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Fixes for pycodestyle 2.2.0
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2016-11-15 16:56:50 +00:00 |
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Nicola Soranzo
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11b4f3a60c
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Fix import order and Python3 compatibility for tools/
xref #1715
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2016-09-29 19:26:22 +01:00 |
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Nicola Soranzo
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6ba6f798ec
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Fix more E203 flake8 errors
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2016-05-17 23:53:16 +01:00 |
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Nicola Soranzo
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8a43b2b492
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Python 3: use "as" instead of comma in except clause
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2016-05-17 23:53:16 +01:00 |
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Nicola Soranzo
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69cda48690
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Remove remaining references to galaxy.eggs . flake8 some files in tools/ .
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2015-10-26 19:29:13 +00:00 |
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Björn Grüning
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ccdd1207fb
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Add rpy requirement.
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2014-11-14 14:56:28 +00:00 |
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Daniel Blankenberg
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cb1f6c92f6
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Update NGS read simulator to use job working directory.
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2014-04-18 13:31:13 -04:00 |
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Nicola Soranzo
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d7d1210111
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Prevent no choice in multiple selections.
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2013-09-18 14:43:59 +02:00 |
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Jeremy Goecks
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9a5679c37c
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Use mako template in tool help so that dynamic image paths can be used. Fixes #141
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2012-08-07 09:40:51 -04:00 |
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Daniel Blankenberg
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023c4db69e
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Replace old filter() on tool_data_tables by param value hack with param.fields.path for several tools.
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2011-11-29 17:30:14 -05:00 |
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Kanwei Li
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2d0b8eb830
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Adjust image links in tools to work with a proxy prefix [Brad Chapman]. Fixes #141
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2010-12-14 14:22:13 -05:00 |
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Kelly Vincent
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7181c0418e
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Corrected bug in reference to genome file in NGS simulation tool
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2010-11-11 11:29:31 -05:00 |
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Kelly Vincent
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c75adfdda5
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Adding NGS simulation tool
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2010-11-03 13:52:52 -04:00 |
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