Commit Graph
12 Commits
Author SHA1 Message Date
Alex Ostrovsky f884f9b149 Allow any format in export tool 2022-01-11 13:10:03 -08:00
Marius van den BeekandNicola Soranzo 94881812a0 Tweak tool options
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
2021-08-25 18:03:19 +03:00
mvdbeek ee63fcc736 Allow skipping sanitization of / char
and allow using collection name as outer directory
2021-08-25 10:51:13 +03:00
mvdbeek 8bf9de4e1a Provide $input.serialize(), allow wrap_json to serialize collections 2021-05-28 22:49:49 +02:00
mvdbeek d6e58fb898 Implement export of FileParameter / MetadataFile files 2021-05-27 17:23:42 +02:00
mvdbeek 05d517a384 Mirror collection structure on exported filesystem 2021-05-27 17:21:01 +02:00
mvdbeek f5d05fb545 Allow creation of subdirectories on export 2021-05-27 17:21:01 +02:00
mvdbeek a4c0468813 Sanitize exported filenames
Now can't include leading `.`, `/` and utf null, and is truncated at 255
characters. Duplicate filenames will raise an error.
2021-05-27 17:21:01 +02:00
mvdbeek 920a4b3f77 Provide files to export as json configfile
This avoids shell limits and quoting issues.
2021-05-27 17:21:01 +02:00
mvdbeek f24024c0d7 Add name_and_ext shortcut 2021-05-27 17:21:01 +02:00
mvdbeek 97af023140 Enable datatype aliases for stuff that has weird extensions in Galaxy 2021-05-27 17:21:01 +02:00
John Chilton e9081759ca Add tool for exporting individual files to Galaxy.
Stolen wholesale from EU. Trying to make it a bit more general though.
2021-05-27 17:21:01 +02:00