7 Commits

Include renames

Author	SHA1	Message	Date
Nicola Soranzo	7fee81607c	Add linting with ruff ... ruff (https://github.com/charliermarsh/ruff) is a new and extremely fast Python linter, written in Rust. Ruff can be used to replace Flake8 (plus a variety of plugins), isort, pydocstyle, yesqa, eradicate, pyupgrade, and autoflake. Here ruff is added to our current linters (flake8, flake8-bugbear and isort) while we assess its reliability. I've not enabled the isort rules because many of the options we use are not implemented yet. I have instead enabled the pyupgrade rules (a tool which I run manually every few months). Also: - Fix new linting errors reported by ruff.	2023-01-16 14:34:56 +00:00
Dannon Baker	03351d2a9f	Apply black to tools as well	2022-02-03 09:12:13 -05:00
mvdbeek	8bf9de4e1a	Provide $input.serialize(), allow wrap_json to serialize collections	2021-05-28 22:49:49 +02:00
mvdbeek	d6e58fb898	Implement export of FileParameter / MetadataFile files	2021-05-27 17:23:42 +02:00
mvdbeek	a4c0468813	Sanitize exported filenames ... Now can't include leading `.`, `/` and utf null, and is truncated at 255 characters. Duplicate filenames will raise an error.	2021-05-27 17:21:01 +02:00
mvdbeek	920a4b3f77	Provide files to export as json configfile ... This avoids shell limits and quoting issues.	2021-05-27 17:21:01 +02:00
John Chilton	e9081759ca	Add tool for exporting individual files to Galaxy. ... Stolen wholesale from EU. Trying to make it a bit more general though.	2021-05-27 17:21:01 +02:00