3 Commits

Include renames

Author	SHA1	Message	Date
Dave Bouvier	bb25625d31	Restore files that were deleted due to a tool migration, but are still used in test/functiona/test_get_data.py.	2013-11-13 10:46:38 -05:00
Dave Bouvier	b0efe4ddea	Migrate tools from the distribution to the tool shed, including but not limited to samtools and fastx_toolkit tools.	2013-09-26 10:05:00 -04:00
Greg Von Kuster	8ba7de4c8b	Improved checking to determine if a bam file is sorted. If the version of samtools being used is 0.1.13 or newer, determination of bam sorting is now much more robust. Add a new functional test to the test_library_features script that tests uploading a library_dataset (where the file is an unsorted bam file) using a combination of 'upload_paths' and 'link_to_files'. Rename the test-data file previously named 3.bam to now be named 3unsorted.bam to clarify that it is an unsorted bam file.	2011-03-23 12:18:57 -04:00