- Implement a wrapper script for launching a docker-galaxy-stable setup a many ways for this task including:
- Configure container's Galaxy with outer Galaxy's lib and test directory.
- Collect log files.
- Log a statement for interacting with the container easily while the test is running.
- Disable unneeded services.
- Implement a fan-in-fan-out style workflow for performance testing.
- Add an option to test performance of scheduling workflows without actually running jobs.
- Sample tool for creating large collections easily at beginning of tests (much faster than uploads).
- Sample tool for splitting a file into a collection for fan in and out workflow test.
- Assume Python 2.7 in scripts to simplify things.
- Add documentation.
Create new makefile targets for release management.
- ``release-create-issue``: Automates creating a release checklist - https://github.com/jmchilton/galaxy/issues/41)
Check list contains actual tailored ``make`` commands and links (for PRs and issues).
- ``release-check-metadata``: Checks milestone PRs for required metadata needed for generating bootstrapped release notes.
` ``release-bootstrap-history``: Bootstrap release notes from PRs and metadata.
- ``release-check-blocking-prs``: Check for PRs blocking release, should happen before branching release and before tagging release.
- ``release-check-blocking-issues``: Check for Issues blocking release, should happen before tagging release. (Only allowed issue is the release creation issue.)
The issue created with ``release-create-issue`` documents how and when to execute subsequent ``make`` targets (including the target to create the issue for the next release).
This PR contains a bunch of other enhancements to the bootstrap_history.py script to enable these targets and renames ``create_release_rc`` Makefile target so all release related targets start with the prefix ``release-``.
Conflicts:
Makefile
common_startup.sh rather than attempting to use sha256sum. Older
versions of coreutils (such as in RHEL 6) did not include the --strict
argument to sha256sum.
that contain a `+` in the version. For these older versions, directly
install the wheel or install from the sdist. Technically 1.4 and later
can install wheels, but in testing, only 1.5+ was able to install them
properly with their scripts.
The new heredoc execute and redirect syntax is Bourne-compatible.
pip --pre is no longer necessary since the Galaxy pip version is no
longer a development version of pip.
management. Drop hard requirement on lzo (doubt anyone other than
usegalaxy.org is using it, but it will be added as a extras option for
bxlab/bx-python for anyone who is).
Fixes#1150
John Chilton